Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8607_RS05925 Genome accession   NZ_AP028360
Coordinates   1131682..1132641 (+) Length   319 a.a.
NCBI ID   WP_002876195.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10579     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1111354..1144858 1131682..1132641 within 0


Gene organization within MGE regions


Location: 1111354..1144858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8607_RS05815 (B10579_11380) pglI 1111354..1112283 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  R8607_RS05820 (B10579_11390) pglH 1112276..1113355 (-) 1080 WP_079264556.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  R8607_RS05825 (B10579_11400) pglK 1113352..1115046 (-) 1695 WP_002869587.1 ABC-type lipopolysaccharide transporter PglK -
  R8607_RS05830 (B10579_11410) galE 1115040..1116026 (-) 987 WP_052778503.1 UDP-glucose 4-epimerase GalE -
  R8607_RS05835 (B10579_11420) - 1116085..1116879 (-) 795 WP_002860221.1 3'-5' exonuclease -
  R8607_RS05840 (B10579_11430) waaC 1116946..1117974 (+) 1029 WP_002876134.1 lipopolysaccharide heptosyltransferase I -
  R8607_RS05845 (B10579_11440) htrB 1117964..1118842 (+) 879 WP_002876133.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  R8607_RS05850 (B10579_11450) - 1118839..1119540 (+) 702 WP_002876132.1 glycosyltransferase family 2 protein -
  R8607_RS05855 (B10579_11460) rfbA 1119551..1120429 (+) 879 WP_002869595.1 glucose-1-phosphate thymidylyltransferase RfbA -
  R8607_RS05860 (B10579_11470) rfbB 1120429..1121460 (+) 1032 WP_002860226.1 dTDP-glucose 4,6-dehydratase -
  R8607_RS05865 (B10579_11480) wlaRA 1121463..1121912 (+) 450 WP_002912325.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA -
  R8607_RS05870 (B10579_11490) wlaRB 1121909..1122313 (+) 405 WP_002860228.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB -
  R8607_RS05875 (B10579_11500) - 1122303..1122745 (+) 443 Protein_1132 DapH/DapD/GlmU-related protein -
  R8607_RS05880 (B10579_11510) - 1122767..1123294 (+) 528 WP_002876185.1 GNAT family N-acetyltransferase -
  R8607_RS08915 - 1123315..1123572 (+) 258 Protein_1134 hypothetical protein -
  R8607_RS05885 (B10579_11520) - 1123591..1124667 (+) 1077 WP_002876186.1 glycosyltransferase family 2 protein -
  R8607_RS05890 (B10579_11530) wlaRG 1124664..1125749 (+) 1086 WP_002876187.1 class E lipooligosaccharide biosynthesis aminotransferase WlaRG -
  R8607_RS05895 (B10579_11540) - 1125781..1127034 (-) 1254 WP_002876189.1 DUF2972 domain-containing protein -
  R8607_RS05900 (B10579_11550) - 1127031..1128053 (-) 1023 WP_002876190.1 hypothetical protein -
  R8607_RS05905 (B10579_11560) - 1128124..1128897 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  R8607_RS05910 (B10579_11570) wlaTB 1128890..1129846 (+) 957 WP_002860237.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  R8607_RS05915 (B10579_11580) wlaTC 1129843..1130802 (+) 960 WP_002876191.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  R8607_RS05920 (B10579_11590) - 1130805..1131623 (-) 819 WP_002876193.1 glycosyltransferase family 2 protein -
  R8607_RS05925 (B10579_11600) waaF 1131682..1132641 (+) 960 WP_002876195.1 lipopolysaccharide heptosyltransferase II Regulator
  R8607_RS05930 (B10579_11610) gmhA 1132622..1133182 (-) 561 WP_002876196.1 D-sedoheptulose 7-phosphate isomerase -
  R8607_RS05935 (B10579_11620) rfaE1 1133179..1134564 (-) 1386 WP_002910336.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8607_RS05940 (B10579_11630) rfaD 1134557..1135510 (-) 954 WP_002860242.1 ADP-glyceromanno-heptose 6-epimerase -
  R8607_RS05945 (B10579_11640) gmhB 1135511..1136072 (-) 562 Protein_1147 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  R8607_RS05950 (B10579_11650) - 1136153..1136455 (+) 303 WP_002852762.1 c-type cytochrome -
  R8607_RS05955 (B10579_11660) ccoS 1136478..1136684 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  R8607_RS05960 (B10579_11670) - 1136681..1139038 (-) 2358 WP_079263609.1 heavy metal translocating P-type ATPase -
  R8607_RS05965 (B10579_11680) rho 1139147..1140445 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  R8607_RS05970 (B10579_11690) dnaX 1140449..1141978 (+) 1530 WP_002869626.1 DNA polymerase III subunit gamma/tau -
  R8607_RS05975 - 1141975..1142493 (-) 519 Protein_1153 DUF2165 family protein -
  R8607_RS05980 (B10579_11720) copA 1142565..1144664 (-) 2100 WP_002869627.1 copper-translocating P-type ATPase CopA -
  R8607_RS05985 (B10579_11730) - 1144664..1144858 (-) 195 WP_052778499.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36607.08 Da        Isoelectric Point: 10.2870

>NTDB_id=104782 R8607_RS05925 WP_002876195.1 1131682..1132641(+) (waaF) [Campylobacter jejuni strain BCH-10579]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide


Download         Length: 960 bp        

>NTDB_id=104782 R8607_RS05925 WP_002876195.1 1131682..1132641(+) (waaF) [Campylobacter jejuni strain BCH-10579]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.025

99.687

0.937

Multiple sequence alignment