Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AADG54_RS00590 Genome accession   NZ_OZ001727
Coordinates   125498..125974 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain HET6 MIAE 10510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 120498..130974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG54_RS00565 (FLLPOIKF_00111) - 120665..123181 (+) 2517 WP_094171596.1 hypothetical protein -
  AADG54_RS00570 (FLLPOIKF_00112) - 123257..123712 (+) 456 WP_000581504.1 IrmA family protein -
  AADG54_RS00575 (FLLPOIKF_00113) - 123791..124024 (+) 234 WP_001119729.1 DUF905 family protein -
  AADG54_RS00580 (FLLPOIKF_00114) - 124124..124942 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  AADG54_RS00585 (FLLPOIKF_00115) - 124997..125482 (+) 486 WP_016238749.1 antirestriction protein -
  AADG54_RS00590 (FLLPOIKF_00116) radC 125498..125974 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  AADG54_RS00595 (FLLPOIKF_00117) yeeT 126037..126258 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  AADG54_RS00600 (FLLPOIKF_00118) cbeA 126332..126700 (+) 369 WP_001551305.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AADG54_RS00605 (FLLPOIKF_00119) cbtA 126789..127162 (+) 374 Protein_115 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AADG54_RS00610 (FLLPOIKF_00120) yeeW 127159..127353 (+) 195 WP_000988599.1 DUF5983 family protein -
  AADG54_RS00615 - 127399..127479 (+) 81 Protein_117 hypothetical protein -
  AADG54_RS00620 - 127768..127914 (-) 147 Protein_118 transposase domain-containing protein -
  AADG54_RS00625 - 127968..128150 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AADG54_RS00630 (FLLPOIKF_00121) tmaR 128251..128580 (-) 330 WP_000450409.1 DUF496 family protein -
  AADG54_RS00635 (FLLPOIKF_00122) yeeA 128752..129810 (-) 1059 WP_001200905.1 FUSC family protein -
  AADG54_RS00640 (FLLPOIKF_00123) sbmC 130008..130481 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1047737 AADG54_RS00590 WP_001186773.1 125498..125974(+) (radC) [Escherichia coli strain HET6 MIAE 10510]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047737 AADG54_RS00590 WP_001186773.1 125498..125974(+) (radC) [Escherichia coli strain HET6 MIAE 10510]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment