Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AADG37_RS13160 Genome accession   NZ_OZ001712
Coordinates   2751958..2752950 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain JEB8 MIAE 10523     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746958..2757950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG37_RS13135 (FIEDEJGE_02563) rbsD 2747082..2747501 (+) 420 WP_000715936.1 D-ribose pyranase -
  AADG37_RS13140 (FIEDEJGE_02564) rbsA 2747509..2749014 (+) 1506 WP_001551940.1 ribose ABC transporter ATP-binding protein RbsA -
  AADG37_RS13145 (FIEDEJGE_02565) rbsC 2749019..2749984 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  AADG37_RS13150 (FIEDEJGE_02566) rbsB 2750009..2750899 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AADG37_RS13155 (FIEDEJGE_02567) rbsK 2751025..2751954 (+) 930 WP_001551941.1 ribokinase -
  AADG37_RS13160 (FIEDEJGE_02568) cytR 2751958..2752950 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  AADG37_RS13165 (FIEDEJGE_02569) mdtD 2752916..2754343 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AADG37_RS13170 (FIEDEJGE_02570) yieP 2754366..2755058 (-) 693 WP_001131178.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=1047700 AADG37_RS13160 WP_000224470.1 2751958..2752950(+) (cytR) [Escherichia coli strain JEB8 MIAE 10523]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1047700 AADG37_RS13160 WP_000224470.1 2751958..2752950(+) (cytR) [Escherichia coli strain JEB8 MIAE 10523]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGAGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACACCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364