Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NTHI723_RS05960 Genome accession   NZ_CP007472
Coordinates   1209434..1209937 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 723     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204434..1214937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI723_RS05935 (NTHI723_01194) - 1204576..1205628 (+) 1053 WP_044364751.1 extracellular solute-binding protein -
  NTHI723_RS05940 (NTHI723_01195) hslU 1205698..1207032 (-) 1335 WP_044364754.1 HslU--HslV peptidase ATPase subunit -
  NTHI723_RS05945 (NTHI723_01196) hslV 1207043..1207570 (-) 528 WP_005652018.1 ATP-dependent protease subunit HslV -
  NTHI723_RS05950 (NTHI723_01197) aphA 1207789..1208496 (+) 708 WP_005649426.1 acid phosphatase AphA -
  NTHI723_RS09650 - 1208532..1209333 (-) 802 Protein_1180 IS3 family transposase -
  NTHI723_RS05960 (NTHI723_01198) luxS 1209434..1209937 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  NTHI723_RS05965 (NTHI723_01199) - 1210267..1210740 (-) 474 WP_005656551.1 YqaA family protein -
  NTHI723_RS05970 (NTHI723_01200) - 1210740..1211342 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  NTHI723_RS05975 (NTHI723_01201) - 1211458..1211835 (+) 378 WP_005652029.1 PRD domain-containing protein -
  NTHI723_RS05980 (NTHI723_01202) rsmG 1211975..1212586 (+) 612 WP_044364756.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NTHI723_RS05985 (NTHI723_01203) - 1212712..1213086 (+) 375 WP_011272082.1 ATP synthase subunit I -
  NTHI723_RS05990 (NTHI723_01204) atpB 1213123..1213911 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  NTHI723_RS05995 (NTHI723_01205) atpE 1213967..1214221 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  NTHI723_RS06000 (NTHI723_01206) atpF 1214271..1214741 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=104757 NTHI723_RS05960 WP_005662536.1 1209434..1209937(-) (luxS) [Haemophilus influenzae strain 723]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=104757 NTHI723_RS05960 WP_005662536.1 1209434..1209937(-) (luxS) [Haemophilus influenzae strain 723]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment