Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   U8955_RS05085 Genome accession   NZ_OY769914
Coordinates   1007484..1007948 (+) Length   154 a.a.
NCBI ID   WP_001135752.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002484..1012948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS05045 (SDENT7746_05065) - 1003123..1003764 (+) 642 WP_038805235.1 imm11 family protein -
  U8955_RS05050 (SDENT7746_05075) - 1004027..1004254 (+) 228 WP_038805652.1 hypothetical protein -
  U8955_RS05055 (SDENT7746_05080) - 1004398..1004736 (+) 339 WP_050562301.1 immunity protein Imm33 domain-containing protein -
  U8955_RS05060 (SDENT7746_05085) - 1004737..1005051 (+) 315 WP_227698184.1 hypothetical protein -
  U8955_RS05065 (SDENT7746_05090) - 1005089..1005514 (+) 426 WP_038805236.1 hypothetical protein -
  U8955_RS05070 (SDENT7746_05095) - 1005584..1005961 (+) 378 WP_038805237.1 hypothetical protein -
  U8955_RS05075 (SDENT7746_05100) - 1006067..1006759 (+) 693 WP_038805238.1 YjjG family noncanonical pyrimidine nucleotidase -
  U8955_RS05080 (SDENT7746_05105) - 1006821..1007474 (+) 654 WP_038805239.1 uracil-DNA glycosylase -
  U8955_RS05085 (SDENT7746_05110) mutX 1007484..1007948 (+) 465 WP_001135752.1 NUDIX hydrolase Machinery gene
  U8955_RS05090 (SDENT7746_05115) - 1007961..1009229 (+) 1269 WP_038805240.1 dihydroorotase -
  U8955_RS05095 (SDENT7746_05120) - 1009271..1010626 (+) 1356 WP_038805241.1 MATE family efflux transporter -
  U8955_RS05100 (SDENT7746_05125) - 1010780..1011748 (+) 969 WP_038805242.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  U8955_RS05105 (SDENT7746_05130) - 1011764..1012756 (+) 993 WP_038805243.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17876.25 Da        Isoelectric Point: 4.2287

>NTDB_id=1047520 U8955_RS05085 WP_001135752.1 1007484..1007948(+) (mutX) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MPQLATICYIDNGKELLMLHRNKKLNDVHEGKWIGVGGKLERGETPQECAAREIFEETGLKAKPVLKGIITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1047520 U8955_RS05085 WP_001135752.1 1007484..1007948(+) (mutX) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAACGGAAAAGAACTGCTCATGCTGCATCGTAATAAGAAGCTGAATGA
TGTCCATGAAGGCAAATGGATTGGTGTGGGTGGTAAGTTGGAGCGAGGGGAGACACCTCAGGAATGCGCAGCGCGTGAAA
TCTTCGAGGAAACGGGTTTGAAAGCCAAGCCAGTTCTAAAAGGCATTATCACTTTTCCAGAATTCACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACAGAGTTTGAAGGTGATTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAAGTTTTGAGCAAGCCAACTTGGGAGGGTGATCACACCTTTGTTGAGTGGCTTTTAGAGGACAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACTCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

96.753

100

0.968