Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   U8955_RS02055 Genome accession   NZ_OY769914
Coordinates   394391..396760 (-) Length   789 a.a.
NCBI ID   WP_038804102.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389391..401760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS02030 (SDENT7746_02060) liaF 389974..390672 (+) 699 WP_038804107.1 cell wall-active antibiotics response protein LiaF -
  U8955_RS02035 (SDENT7746_02065) - 390669..391667 (+) 999 WP_038804106.1 sensor histidine kinase -
  U8955_RS02040 (SDENT7746_02070) vraR 391678..392310 (+) 633 WP_038804105.1 response regulator transcription factor Regulator
  U8955_RS02045 (SDENT7746_02075) - 392311..392967 (+) 657 WP_038804104.1 DNA alkylation repair protein -
  U8955_RS02050 (SDENT7746_02080) tig 393060..394343 (+) 1284 WP_038804103.1 trigger factor -
  U8955_RS02055 (SDENT7746_02085) recD/recD2/recDB 394391..396760 (-) 2370 WP_038804102.1 ATP-dependent RecD-like DNA helicase Machinery gene
  U8955_RS02060 (SDENT7746_02090) lepB 396910..397524 (-) 615 WP_038804101.1 signal peptidase I -
  U8955_RS02065 (SDENT7746_02095) rnhC 397528..398409 (-) 882 WP_038804100.1 ribonuclease HIII -
  U8955_RS02070 (SDENT7746_02100) zapA 398496..398798 (+) 303 WP_000002027.1 cell division protein ZapA -
  U8955_RS02075 (SDENT7746_02105) - 398795..399343 (+) 549 WP_038804099.1 CvpA family protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88665.50 Da        Isoelectric Point: 4.5023

>NTDB_id=1047489 U8955_RS02055 WP_038804102.1 394391..396760(-) (recD/recD2/recDB) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MEVYFSGTIERIIFENVSNFYRILLLDIQDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDIVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKNQDLETIQKH
IASVEEELGIQYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIMSSHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVR
HIGTARKTYLIERFSDLIENNIEESKQAFSETATSSDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=1047489 U8955_RS02055 WP_038804102.1 394391..396760(-) (recD/recD2/recDB) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATGTCAGTAATTTTTATCGCATCCTCCTCCTAGA
TATCCAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACCGGAACCATGGCTGATGTAATAGAGGGTG
AAGACTACACTTTTTGGGGGCAAATCGTACAGCACTCCAAGTATGGTGAACAGCTACAGATCAGTCGTTACGAGCGAGCA
AAACCCACTAGCAAGGGCTTGGTCAAGTATTTCTCCAGCAGTCATTTTAAGGGAATTGGACTCAAAACAGCTCAGAAAAT
CGTGGATACGTATGGTGAAAATACCATTGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAAGCATTGCTGGACTCTCTG
CCAAAAACCGTGAGGCTTTCGTCTCCACCCTCCGCCTCAACTATGGGACAGAGATGGTCTTGGCAAAACTTGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACTCTCGATATTGTCGAAAATTATCCCTA
CCAGCTGGTCGAGGATATCAAGGGTTTGGGTTTTACCATTGCTGACCAACTAGCGGAGGAACTAGGCATCGAAAGTCAGG
CTCCCGAGCGCTTTCGTGCTGGCCTTGTCCATAGTCTCTTTCAAGGCTGTATGGATACGGGCGATACCTACATGGAAGCC
CGCGATTTGCTGGAACAGACCCTGACTCTCCTCGAGTCTTCCCGACCCGTGGAATTGGACCCCAGCCAAGTTGCCCAAGA
ACTCTCCTACCTCATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCTGAGG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAAAATCAGGATTTAGAAACCATTCAAAAGCAT
ATTGCTAGTGTCGAGGAAGAATTAGGTATCCAATACGATAGCATCCAAAAACAGGCTATCTGCGATGCCATTCAAAACAA
GGTCTTTATCCTAACAGGTGGGCCTGGTACAGGTAAGACGACCGTTATCAATGGGATTATCGCTGTCTATGCCCTTTTAG
AAGGACTTGACCTCAGAAAAAAAAGCAACCTACCTATCCTTCTTGCTGCTCCAACTGGTCGAGCGGCTCGACGCATGAAT
GAATTAACAGGTTTGCCTAGTGCGACCATACACCGTCATTTGGGGATGACGGGGGACGATGATACTAGCCATCTGGAAGA
TTATCTGGATGCCGACTTTATCATCGTGGATGAATTTTCCATGGTGGATACTTGGCTAGCCAACCAACTCTTCTCCAACA
TCTCCTCTAATAGTAAAATTCTCATTGTGGGAGACAGTGACCAGTTGCCTTCGGTCAGTCCTGGACAAGTCCTGGCTGAC
CTGCTCCAGATACCTCTGATTCCGCAGACTCGCTTGGAACGGATTTACCGTCAGAGTGAAGAATCAACTATCGTCACCTT
GGCTAGTCAAATTCGACAGGGAATCTTGCCAGCAGATTTTACCCAGAAAAAAGCTGATCGCTCCTACTTTGAAATCATGA
GTAGCCATATCCCAGCTACGATTGAGAAAATTCTTGGCGCTGCCCTCAGAAGTGGCATTCCGGCTCGAGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGATGCCATCAACCAGCTCATGCAAGACCTCCTTAATCCACCACAAAA
AGACCAACTCAGTTTTGAAGCCCCCCAATGCCACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAATGGAGACCTAGGCTACATCACAGACCTGATTCCTGGTAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTTGTCTACCCTCGAAATGAATGGTACAAGATTCGCCTGGCTTACGCTATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTATACAGCCATTACACGGGCCAAGAGCAAGCTCATCCTTCTTGGCGAACTACAGGCCTTTGACTATGCAGTCAGA
CATATCGGAACTGCCCGTAAGACCTATCTGATTGAGCGCTTCAGTGATTTAATTGAAAATAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACATCAAGTGACTCTGAACAATCCTACATCCTCACTGAGGAAAACTGGTCTAGCATCCCAG
CAATGATCGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.42

95.311

0.404