Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SGM86_RS13745 Genome accession   NZ_OY757949
Coordinates   2795110..2795586 (-) Length   158 a.a.
NCBI ID   WP_022645117.1    Uniprot ID   -
Organism   Escherichia coli isolate F1053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2790110..2800586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGM86_RS13710 (FGAF1053_26560) - 2790845..2791612 (-) 768 Protein_2679 DUF4942 domain-containing protein -
  SGM86_RS24830 - 2792946..2793023 (-) 78 Protein_2681 hypothetical protein -
  SGM86_RS13720 (FGAF1053_26590) - 2793120..2793317 (-) 198 WP_000772035.1 DUF957 domain-containing protein -
  SGM86_RS13725 (FGAF1053_26600) - 2793329..2793820 (-) 492 WP_123000833.1 DUF5983 family protein -
  SGM86_RS13730 (FGAF1053_26610) - 2793817..2794191 (-) 375 WP_001094452.1 TA system toxin CbtA family protein -
  SGM86_RS13735 (FGAF1053_26620) - 2794281..2794649 (-) 369 WP_112019398.1 type IV toxin-antitoxin system YeeU family antitoxin -
  SGM86_RS13740 (FGAF1053_26630) - 2794826..2795047 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  SGM86_RS13745 (FGAF1053_26640) radC 2795110..2795586 (-) 477 WP_022645117.1 JAB domain-containing protein Machinery gene
  SGM86_RS13750 (FGAF1053_26650) - 2795602..2796075 (-) 474 WP_112930679.1 antirestriction protein -
  SGM86_RS13755 (FGAF1053_26660) - 2796417..2796548 (-) 132 Protein_2689 DUF945 domain-containing protein -
  SGM86_RS13760 (FGAF1053_26680) - 2796566..2797384 (-) 819 Protein_2690 DUF932 domain-containing protein -
  SGM86_RS13765 (FGAF1053_26690) - 2797501..2797696 (-) 196 Protein_2691 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=1047423 SGM86_RS13745 WP_022645117.1 2795110..2795586(-) (radC) [Escherichia coli isolate F1053]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047423 SGM86_RS13745 WP_022645117.1 2795110..2795586(-) (radC) [Escherichia coli isolate F1053]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392