Detailed information NTG1047396

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SGM86_RS05060
• Genome accession: NZ_OY757949
• Coordinates: 1028890..1029882 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate F1053
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1023890..1034882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGM86_RS05030 (FGAF1053_09820)	ispD	1023951..1024661 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
SGM86_RS05035 (FGAF1053_09830)	ispF	1024661..1025140 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SGM86_RS05040 (FGAF1053_09840)	truD	1025137..1026186 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
SGM86_RS05045 (FGAF1053_09850)	surE	1026167..1026928 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SGM86_RS05050 (FGAF1053_09860)	pcm	1026922..1027548 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SGM86_RS05055 (FGAF1053_09870)	nlpD	1027733..1028827 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
SGM86_RS05060 (FGAF1053_09880)	rpoS	1028890..1029882 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
SGM86_RS05065 (FGAF1053_09890)	ygbN	1029976..1031340 (-)	1365	WP_000104429.1	GntP family transporter	-
SGM86_RS05070 (FGAF1053_09900)	ygbM	1031429..1032205 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
SGM86_RS05075 (FGAF1053_09910)	ygbL	1032210..1032848 (-)	639	WP_001278994.1	aldolase	-
SGM86_RS05080 (FGAF1053_09920)	otnK	1032845..1034107 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1047396 SGM86_RS05060 WP_000081550.1 1028890..1029882(+) (rpoS) [Escherichia coli isolate F1053]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1047396 SGM86_RS05060 WP_000081550.1 1028890..1029882(+) (rpoS) [Escherichia coli isolate F1053]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715