Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8605_RS07745 Genome accession   NZ_AP028358
Coordinates   1515529..1516941 (-) Length   470 a.a.
NCBI ID   WP_100612060.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10569     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510529..1521941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8605_RS07720 (B10569_15480) - 1510853..1511617 (+) 765 WP_002855301.1 TSUP family transporter -
  R8605_RS07725 (B10569_15490) ctsF 1511610..1512791 (-) 1182 WP_070265382.1 type II secretion system F family protein Machinery gene
  R8605_RS07730 (B10569_15500) ctsE 1512788..1514347 (-) 1560 WP_070265383.1 GspE/PulE family protein Machinery gene
  R8605_RS07735 (B10569_15510) ctsX 1514337..1514924 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8605_RS07740 (B10569_15520) ctsP 1514928..1515536 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8605_RS07745 (B10569_15530) ctsD 1515529..1516941 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8605_RS07750 (B10569_15540) ctsR 1516919..1517230 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8605_RS07755 (B10569_15550) nifJ 1517254..1520814 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8605_RS07760 (B10569_15560) - 1520907..1521548 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53091.56 Da        Isoelectric Point: 6.1926

>NTDB_id=104739 R8605_RS07745 WP_100612060.1 1515529..1516941(-) (ctsD) [Campylobacter jejuni strain BCH-10569]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIEESLDEFAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGIDTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=104739 R8605_RS07745 WP_100612060.1 1515529..1516941(-) (ctsD) [Campylobacter jejuni strain BCH-10569]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATAGAAGAAAGTCTTGATGAGTTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTAGATGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGTATTGATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATTGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

98.936

100

0.989

Multiple sequence alignment