Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AABJ57_RS09680 Genome accession   NZ_OY754859
Coordinates   1822694..1823269 (+) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli isolate Reference     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817694..1828269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ57_RS09660 - 1818077..1819375 (+) 1299 WP_338371486.1 major outer membrane protein -
  AABJ57_RS09665 dnaJ 1819515..1820639 (-) 1125 WP_002790050.1 molecular chaperone DnaJ -
  AABJ57_RS09670 - 1820786..1821457 (+) 672 WP_002776259.1 response regulator transcription factor -
  AABJ57_RS09675 - 1821454..1822704 (+) 1251 WP_052778670.1 ArsS family sensor histidine kinase -
  AABJ57_RS09680 recR 1822694..1823269 (+) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  AABJ57_RS09685 - 1823271..1823804 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  AABJ57_RS09690 cybH 1823801..1824493 (-) 693 WP_002790049.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  AABJ57_RS09695 - 1824505..1826220 (-) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  AABJ57_RS09700 - 1826226..1827365 (-) 1140 WP_002825049.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=1047376 AABJ57_RS09680 WP_002776257.1 1822694..1823269(+) (recR) [Campylobacter coli isolate Reference]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1047376 AABJ57_RS09680 WP_002776257.1 1822694..1823269(+) (recR) [Campylobacter coli isolate Reference]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment