Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABJ60_RS18575 Genome accession   NZ_OY754853
Coordinates   3612474..3612950 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli isolate Reference     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3607474..3617950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ60_RS18525 nanS 3607581..3608561 (+) 981 WP_000991415.1 sialate O-acetylesterase -
  AABJ60_RS18530 - 3608569..3609219 (-) 651 WP_001037966.1 HNH endonuclease -
  AABJ60_RS18535 - 3609356..3609499 (+) 144 Protein_3637 restriction endonuclease -
  AABJ60_RS18540 - 3610163..3610291 (-) 129 Protein_3638 transcriptional regulator -
  AABJ60_RS18545 - 3610267..3610416 (-) 150 Protein_3639 restriction endonuclease subunit M -
  AABJ60_RS18550 - 3610501..3610698 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  AABJ60_RS18555 - 3610710..3611198 (-) 489 WP_000777547.1 DUF5983 family protein -
  AABJ60_RS18560 - 3611195..3611569 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  AABJ60_RS18565 - 3611659..3612027 (-) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AABJ60_RS18570 - 3612190..3612411 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AABJ60_RS18575 radC 3612474..3612950 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  AABJ60_RS18580 - 3612966..3613451 (-) 486 WP_000849588.1 antirestriction protein -
  AABJ60_RS18585 - 3613506..3614324 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  AABJ60_RS18590 - 3614424..3614657 (-) 234 WP_001119729.1 DUF905 family protein -
  AABJ60_RS18595 - 3614736..3615104 (-) 369 Protein_3649 IrmA family protein -
  AABJ60_RS18605 - 3616567..3617737 (+) 1171 Protein_3651 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=1047288 AABJ60_RS18575 WP_001186774.1 3612474..3612950(-) (radC) [Escherichia coli isolate Reference]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047288 AABJ60_RS18575 WP_001186774.1 3612474..3612950(-) (radC) [Escherichia coli isolate Reference]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399