Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AABJ60_RS16105 Genome accession   NZ_OY754853
Coordinates   3105424..3105900 (-) Length   158 a.a.
NCBI ID   WP_001367144.1    Uniprot ID   -
Organism   Escherichia coli isolate Reference     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3100424..3110900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ60_RS16070 - 3101182..3102030 (-) 849 WP_001280444.1 DUF4942 domain-containing protein -
  AABJ60_RS16075 - 3102313..3103332 (-) 1020 WP_000875212.1 IS110 family transposase -
  AABJ60_RS16080 - 3103546..3103743 (-) 198 WP_000839232.1 DUF957 domain-containing protein -
  AABJ60_RS16085 - 3103755..3104243 (-) 489 WP_000761703.1 DUF5983 family protein -
  AABJ60_RS16090 - 3104240..3104617 (-) 378 WP_001094440.1 TA system toxin CbtA family protein -
  AABJ60_RS16095 - 3104664..3105041 (-) 378 WP_024166067.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AABJ60_RS16100 - 3105116..3105337 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  AABJ60_RS16105 radC 3105424..3105900 (-) 477 WP_001367144.1 RadC family protein Machinery gene
  AABJ60_RS16110 - 3105916..3106395 (-) 480 WP_001449312.1 antirestriction protein -
  AABJ60_RS16115 - 3106489..3106734 (-) 246 WP_000680583.1 hypothetical protein -
  AABJ60_RS16120 - 3106734..3107552 (-) 819 WP_001234621.1 DUF932 domain-containing protein -
  AABJ60_RS16125 - 3107773..3108183 (-) 411 WP_000846706.1 hypothetical protein -
  AABJ60_RS16130 - 3108199..3108882 (-) 684 WP_000775504.1 hypothetical protein -
  AABJ60_RS16135 - 3109016..3110086 (-) 1071 WP_000102618.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17678.36 Da        Isoelectric Point: 7.2020

>NTDB_id=1047282 AABJ60_RS16105 WP_001367144.1 3105424..3105900(-) (radC) [Escherichia coli isolate Reference]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQMIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047282 AABJ60_RS16105 WP_001367144.1 3105424..3105900(-) (radC) [Escherichia coli isolate Reference]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGATGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment