Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AABI57_RS06140 Genome accession   NZ_OY754852
Coordinates   1170345..1170725 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli isolate Reference     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165345..1175725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABI57_RS06115 aspS 1165858..1167609 (+) 1752 WP_057030618.1 aspartate--tRNA ligase -
  AABI57_RS06120 - 1167606..1168181 (+) 576 WP_002776379.1 adenylate kinase -
  AABI57_RS06125 ppa 1168191..1168709 (+) 519 WP_060785215.1 inorganic diphosphatase -
  AABI57_RS06130 msrA 1168757..1169257 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AABI57_RS06135 - 1169480..1170355 (-) 876 WP_215474564.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AABI57_RS06140 dprB 1170345..1170725 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  AABI57_RS06145 dprA 1170722..1171492 (-) 771 WP_002792199.1 DNA-processing protein DprA Machinery gene
  AABI57_RS06150 - 1171482..1172516 (-) 1035 WP_057032538.1 divergent polysaccharide deacetylase family protein -
  AABI57_RS06155 ilvC 1172520..1173542 (-) 1023 WP_057040519.1 ketol-acid reductoisomerase -
  AABI57_RS06160 - 1173665..1175599 (+) 1935 WP_215474565.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=1047237 AABI57_RS06140 WP_002776373.1 1170345..1170725(-) (dprB) [Campylobacter coli isolate Reference]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1047237 AABI57_RS06140 WP_002776373.1 1170345..1170725(-) (dprB) [Campylobacter coli isolate Reference]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCCAAAGGAGGTTCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421