Detailed information NTG1047225

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: AABI57_RS03650
• Genome accession: NZ_OY754852
• Coordinates: 684150..685094 (-)
• Length: 314 a.a.
• NCBI ID: WP_215474557.1
• Uniprot ID: -
• Organism: Campylobacter coli isolate Reference
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 679150..690094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABI57_RS03615	-	679342..679542 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
AABI57_RS03620	-	679572..679871 (-)	300	WP_002777238.1	cytochrome c	-
AABI57_RS03625	-	679948..680511 (+)	564	WP_002787747.1	HAD family hydrolase	-
AABI57_RS03630	rfaD	680508..681461 (+)	954	WP_057030752.1	ADP-glyceromanno-heptose 6-epimerase	-
AABI57_RS03635	rfaE1	681454..682839 (+)	1386	WP_057030751.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
AABI57_RS03640	gmhA	682836..683396 (+)	561	WP_038853888.1	D-sedoheptulose 7-phosphate isomerase	-
AABI57_RS03645	-	683396..684157 (+)	762	WP_002777231.1	glycosyltransferase family 25 protein	-
AABI57_RS03650	waaF	684150..685094 (-)	945	WP_215474557.1	lipopolysaccharide heptosyltransferase II	Regulator
AABI57_RS03655	-	685153..685974 (+)	822	WP_215474556.1	glycosyltransferase family 2 protein	-
AABI57_RS03660	-	686457..686693 (-)	237	WP_072225130.1	alpha-2,3-sialyltransferase	-
AABI57_RS03665	-	686916..687050 (-)	135	WP_002777225.1	alpha-2,3-sialyltransferase	-
AABI57_RS03670	-	687142..687408 (+)	267	WP_215474555.1	class I SAM-dependent methyltransferase	-
AABI57_RS03675	-	687552..687938 (+)	387	WP_171832379.1	hypothetical protein	-
AABI57_RS03680	-	688019..688954 (+)	936	WP_002777223.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36037.59 Da
• Isoelectric Point: 10.3006

>NTDB_id=1047225 AABI57_RS03650 WP_215474557.1 684150..685094(-) (waaF) [Campylobacter coli isolate Reference]
MKVFIHLPTWLGDAVMASPALYGAYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide

• Length: 945 bp

>NTDB_id=1047225 AABI57_RS03650 WP_215474557.1 684150..685094(-) (waaF) [Campylobacter coli isolate Reference]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGCTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (106-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83.387	99.682	0.831