Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABJ67_RS22800 Genome accession   NZ_OY754834
Coordinates   4701381..4702373 (-) Length   330 a.a.
NCBI ID   WP_000224476.1    Uniprot ID   A7ZTW4
Organism   Escherichia coli isolate Reference     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4696381..4707373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ67_RS22790 yieP 4699273..4699965 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  AABJ67_RS22795 mdtD 4699988..4701415 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  AABJ67_RS22800 cytR 4701381..4702373 (-) 993 WP_000224476.1 ribose operon transcriptional repressor RbsR Regulator
  AABJ67_RS22805 rbsK 4702377..4703306 (-) 930 WP_001389346.1 ribokinase -
  AABJ67_RS22810 rbsB 4703432..4704322 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABJ67_RS22815 rbsC 4704347..4705312 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AABJ67_RS22820 rbsA 4705317..4706822 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  AABJ67_RS22825 rbsD 4706830..4707249 (-) 420 WP_338381657.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36584.88 Da        Isoelectric Point: 5.2141

>NTDB_id=1047196 AABJ67_RS22800 WP_000224476.1 4701381..4702373(-) (cytR) [Escherichia coli isolate Reference]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1047196 AABJ67_RS22800 WP_000224476.1 4701381..4702373(-) (cytR) [Escherichia coli isolate Reference]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364