Detailed information NTG1047089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R8904_RS18040
• Genome accession: NZ_OY754453
• Coordinates: 3677597..3678589 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate F95
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3672597..3683589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8904_RS18020 (FGAF95_34370)	otnK	3673372..3674634 (+)	1263	WP_086676129.1	3-oxo-tetronate kinase	-
R8904_RS18025 (FGAF95_34380)	ygbL	3674631..3675269 (+)	639	WP_001278994.1	aldolase	-
R8904_RS18030 (FGAF95_34390)	ygbM	3675274..3676050 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
R8904_RS18035 (FGAF95_34400)	ygbN	3676139..3677503 (+)	1365	WP_061350705.1	GntP family transporter	-
R8904_RS18040 (FGAF95_34410)	rpoS	3677597..3678589 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
R8904_RS18045 (FGAF95_34420)	nlpD	3678652..3679746 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
R8904_RS18050 (FGAF95_34430)	pcm	3679931..3680557 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
R8904_RS18055 (FGAF95_34440)	surE	3680551..3681312 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
R8904_RS18060 (FGAF95_34450)	truD	3681293..3682342 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
R8904_RS18065 (FGAF95_34460)	ispF	3682339..3682818 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R8904_RS18070 (FGAF95_34470)	ispD	3682818..3683528 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1047089 R8904_RS18040 WP_000081550.1 3677597..3678589(-) (rpoS) [Escherichia coli isolate F95]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1047089 R8904_RS18040 WP_000081550.1 3677597..3678589(-) (rpoS) [Escherichia coli isolate F95]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715