Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8904_RS13985 Genome accession   NZ_OY754453
Coordinates   2848110..2848586 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli isolate F95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2843110..2853586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8904_RS13960 (FGAF95_26570) - 2843277..2845793 (+) 2517 WP_001390659.1 hypothetical protein -
  R8904_RS13965 (FGAF95_26580) - 2845869..2846324 (+) 456 WP_000581504.1 IrmA family protein -
  R8904_RS13970 (FGAF95_26590) - 2846403..2846636 (+) 234 WP_001119729.1 DUF905 family protein -
  R8904_RS13975 (FGAF95_26600) - 2846736..2847554 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  R8904_RS13980 (FGAF95_26610) - 2847609..2848094 (+) 486 WP_000849582.1 antirestriction protein -
  R8904_RS13985 (FGAF95_26620) radC 2848110..2848586 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  R8904_RS13990 (FGAF95_26630) yeeT 2848655..2848876 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  R8904_RS13995 (FGAF95_26650) - 2849039..2849407 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8904_RS14000 (FGAF95_26660) - 2849497..2849874 (+) 378 WP_042048782.1 TA system toxin CbtA family protein -
  R8904_RS14005 (FGAF95_26670) - 2849871..2850047 (+) 177 Protein_2727 DUF5983 family protein -
  R8904_RS14010 - 2850108..2850200 (+) 93 Protein_2728 DUF957 domain-containing protein -
  R8904_RS26565 - 2850359..2851387 (+) 1029 Protein_2729 IS110 family transposase -
  R8904_RS14020 (FGAF95_26680) - 2851658..2852023 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  R8904_RS14025 (FGAF95_26690) tmaR 2852124..2852453 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=1047075 R8904_RS13985 WP_001186725.1 2848110..2848586(+) (radC) [Escherichia coli isolate F95]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047075 R8904_RS13985 WP_001186725.1 2848110..2848586(+) (radC) [Escherichia coli isolate F95]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399