Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8822_RS08655 Genome accession   NZ_OY754443
Coordinates   1803415..1803891 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli isolate F829     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798415..1808891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8822_RS08605 (FGAF829_16720) sbmC 1798901..1799374 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  R8822_RS08610 (FGAF829_16730) yeeA 1799573..1800631 (+) 1059 WP_001200891.1 FUSC family protein -
  R8822_RS08615 (FGAF829_16740) tmaR 1800803..1801132 (+) 330 WP_000450409.1 DUF496 family protein -
  R8822_RS08620 - 1801233..1801415 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  R8822_RS08625 - 1801487..1801615 (+) 129 Protein_1679 transposase domain-containing protein -
  R8822_RS08630 - 1801904..1801996 (-) 93 Protein_1680 DUF957 domain-containing protein -
  R8822_RS08635 (FGAF829_16750) yeeW 1802030..1802224 (-) 195 WP_000988600.1 DUF5983 family protein -
  R8822_RS08640 (FGAF829_16760) cbtA 1802221..1802594 (-) 374 Protein_1682 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  R8822_RS08645 (FGAF829_16770) cbeA 1802683..1803051 (-) 369 WP_032243909.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  R8822_RS08650 (FGAF829_16780) yeeT 1803125..1803346 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  R8822_RS08655 (FGAF829_16790) radC 1803415..1803891 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  R8822_RS08660 - 1803907..1804077 (-) 171 Protein_1686 antirestriction protein -
  R8822_RS08665 - 1804078..1804260 (-) 183 Protein_1687 hypothetical protein -
  R8822_RS08670 (FGAF829_16810) - 1804460..1805029 (+) 570 WP_000221530.1 inovirus Gp2 family protein -
  R8822_RS08675 (FGAF829_16820) - 1805289..1805690 (+) 402 WP_000270974.1 putative zinc ribbon protein -
  R8822_RS08680 (FGAF829_16830) - 1805678..1806088 (+) 411 WP_001221617.1 zinc-ribbon domain-containing protein -
  R8822_RS08685 (FGAF829_16840) - 1806372..1807991 (+) 1620 Protein_1691 ISL3 family transposase -
  R8822_RS08690 - 1808071..1808363 (+) 293 Protein_1692 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1046993 R8822_RS08655 WP_001186773.1 1803415..1803891(-) (radC) [Escherichia coli isolate F829]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1046993 R8822_RS08655 WP_001186773.1 1803415..1803891(-) (radC) [Escherichia coli isolate F829]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392