Detailed information NTG1046980

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R8822_RS04955
• Genome accession: NZ_OY754443
• Coordinates: 1017159..1018151 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate F829
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1012159..1023151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8822_RS04925 (FGAF829_09580)	ispD	1012220..1012930 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R8822_RS04930 (FGAF829_09590)	ispF	1012930..1013409 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R8822_RS04935 (FGAF829_09600)	truD	1013406..1014455 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
R8822_RS04940 (FGAF829_09610)	surE	1014436..1015197 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
R8822_RS04945 (FGAF829_09620)	pcm	1015191..1015817 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
R8822_RS04950 (FGAF829_09630)	nlpD	1016002..1017096 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
R8822_RS04955 (FGAF829_09640)	rpoS	1017159..1018151 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
R8822_RS04960 (FGAF829_09650)	ygbN	1018245..1019609 (-)	1365	WP_317729969.1	GntP family transporter	-
R8822_RS04965 (FGAF829_09660)	ygbM	1019698..1020474 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
R8822_RS04970 (FGAF829_09670)	ygbL	1020479..1021117 (-)	639	WP_001278994.1	aldolase	-
R8822_RS04975	otnK	1021114..1022376 (-)	1263	Protein_972	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1046980 R8822_RS04955 WP_000081550.1 1017159..1018151(+) (rpoS) [Escherichia coli isolate F829]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1046980 R8822_RS04955 WP_000081550.1 1017159..1018151(+) (rpoS) [Escherichia coli isolate F829]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715