Detailed information NTG1046950

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: R8804_RS22550
• Genome accession: NZ_OY754427
• Coordinates: 4649658..4650683 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate F200
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4644658..4655683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8804_RS22540 (FGAF200_43010)	rpmE	4646889..4647101 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
R8804_RS22545 (FGAF200_43020)	priA	4647304..4649502 (+)	2199	WP_001298972.1	primosomal protein N'	Machinery gene
R8804_RS22550 (FGAF200_43030)	cytR	4649658..4650683 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
R8804_RS22555 (FGAF200_43040)	ftsN	4650775..4651734 (+)	960	WP_000068834.1	cell division protein FtsN	-
R8804_RS22560 (FGAF200_43050)	hslV	4651827..4652357 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
R8804_RS22565 (FGAF200_43060)	hslU	4652367..4653698 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
R8804_RS22570 (FGAF200_43070)	menA	4653765..4654691 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
R8804_RS22575 (FGAF200_43080)	rraA	4654784..4655269 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
R8804_RS22580 (FGAF200_43090)	zapB	4655354..4655599 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1046950 R8804_RS22550 WP_000644904.1 4649658..4650683(+) (cytR) [Escherichia coli isolate F200]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1046950 R8804_RS22550 WP_000644904.1 4649658..4650683(+) (cytR) [Escherichia coli isolate F200]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628