Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8804_RS17490 Genome accession   NZ_OY754427
Coordinates   3581739..3582344 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate F200     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3576739..3587344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8804_RS17470 (FGAF200_33310) aes 3576880..3577839 (+) 960 WP_000801838.1 acetyl esterase -
  R8804_RS17475 (FGAF200_33320) hemH 3577836..3578798 (-) 963 WP_001250120.1 ferrochelatase -
  R8804_RS17480 (FGAF200_33330) adk 3578930..3579574 (-) 645 WP_001345715.1 adenylate kinase -
  R8804_RS17485 (FGAF200_33340) htpG 3579755..3581629 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8804_RS17490 (FGAF200_33350) recR 3581739..3582344 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  R8804_RS17495 (FGAF200_33360) ybaB 3582344..3582673 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  R8804_RS17500 (FGAF200_33370) dnaX 3582726..3584657 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  R8804_RS17505 (FGAF200_33380) apt 3584786..3585337 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8804_RS17510 (FGAF200_33390) ybaN 3585490..3585867 (-) 378 WP_001188905.1 DUF454 family protein -
  R8804_RS17515 (FGAF200_33400) priC 3585937..3586464 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  R8804_RS17520 (FGAF200_33410) rsmS 3586478..3586639 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1046933 R8804_RS17490 WP_001195025.1 3581739..3582344(-) (recR) [Escherichia coli isolate F200]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1046933 R8804_RS17490 WP_001195025.1 3581739..3582344(-) (recR) [Escherichia coli isolate F200]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443