Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NTHIC486_RS02725 Genome accession   NZ_CP007471
Coordinates   539891..540493 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain C486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 534891..545493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS02705 (NTHIC486_00541) - 535261..536931 (+) 1671 WP_005686908.1 fructose-specific PTS transporter subunit EIIC -
  NTHIC486_RS02715 (NTHIC486_00543) secG 537473..537811 (-) 339 WP_005686907.1 preprotein translocase subunit SecG -
  NTHIC486_RS02720 (NTHIC486_00544) - 537920..539875 (-) 1956 WP_005686905.1 DNA topoisomerase III -
  NTHIC486_RS02725 (NTHIC486_00545) recR 539891..540493 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  NTHIC486_RS02730 (NTHIC486_00546) - 540626..540955 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  NTHIC486_RS02735 (NTHIC486_00547) - 541108..541953 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  NTHIC486_RS02740 (NTHIC486_00548) - 542029..544623 (-) 2595 WP_005686901.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=104685 NTHIC486_RS02725 WP_005626527.1 539891..540493(-) (recR) [Haemophilus influenzae strain C486]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=104685 NTHIC486_RS02725 WP_005626527.1 539891..540493(-) (recR) [Haemophilus influenzae strain C486]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGAGGGGAACTTGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment