Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NTHIC486_RS02480 Genome accession   NZ_CP007471
Coordinates   495395..495898 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 490395..500898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS02450 (NTHIC486_00492) - 490555..491607 (+) 1053 WP_005686979.1 extracellular solute-binding protein -
  NTHIC486_RS02455 (NTHIC486_00493) hslU 491677..493011 (-) 1335 WP_042593308.1 HslU--HslV peptidase ATPase subunit -
  NTHIC486_RS02460 (NTHIC486_00494) hslV 493022..493549 (-) 528 WP_005662532.1 ATP-dependent protease subunit HslV -
  NTHIC486_RS02465 (NTHIC486_00495) aphA 493769..494476 (+) 708 WP_005649426.1 acid phosphatase AphA -
  NTHIC486_RS09380 - 494523..494818 (-) 296 Protein_483 transposase -
  NTHIC486_RS09385 - 494894..495151 (-) 258 WP_032821631.1 IS3 family transposase -
  NTHIC486_RS02480 (NTHIC486_00496) luxS 495395..495898 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  NTHIC486_RS02485 (NTHIC486_00497) - 496228..496701 (-) 474 WP_044345294.1 YqaA family protein -
  NTHIC486_RS02490 (NTHIC486_00498) - 496701..497303 (-) 603 WP_005686974.1 beta-phosphoglucomutase family hydrolase -
  NTHIC486_RS02495 (NTHIC486_00499) - 497419..497796 (+) 378 WP_005686972.1 PRD domain-containing protein -
  NTHIC486_RS02500 (NTHIC486_00500) rsmG 497936..498547 (+) 612 WP_005686970.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NTHIC486_RS02505 (NTHIC486_00501) - 498666..499040 (+) 375 WP_005686968.1 ATP synthase subunit I -
  NTHIC486_RS02510 (NTHIC486_00502) atpB 499068..499856 (+) 789 WP_005686967.1 F0F1 ATP synthase subunit A -
  NTHIC486_RS02515 (NTHIC486_00503) atpE 499912..500166 (+) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  NTHIC486_RS02520 (NTHIC486_00504) atpF 500216..500686 (+) 471 WP_005649414.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=104682 NTHIC486_RS02480 WP_005662536.1 495395..495898(-) (luxS) [Haemophilus influenzae strain C486]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=104682 NTHIC486_RS02480 WP_005662536.1 495395..495898(-) (luxS) [Haemophilus influenzae strain C486]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTATCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment