Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8807_RS17445 Genome accession   NZ_OY754416
Coordinates   3519385..3519990 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate F1267     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3514385..3524990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8807_RS17425 (FGAF1267_34020) aes 3514422..3515381 (+) 960 WP_000801848.1 acetyl esterase -
  R8807_RS17430 (FGAF1267_34030) hemH 3515378..3516340 (-) 963 WP_001250117.1 ferrochelatase -
  R8807_RS17435 (FGAF1267_34040) adk 3516576..3517220 (-) 645 WP_001220233.1 adenylate kinase -
  R8807_RS17440 (FGAF1267_34050) htpG 3517401..3519275 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8807_RS17445 (FGAF1267_34060) recR 3519385..3519990 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  R8807_RS17450 (FGAF1267_34070) ybaB 3519990..3520319 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  R8807_RS17455 (FGAF1267_34080) dnaX 3520372..3522303 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  R8807_RS17460 (FGAF1267_34090) apt 3522432..3522983 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8807_RS17465 (FGAF1267_34100) ybaN 3523136..3523513 (-) 378 WP_001188905.1 DUF454 family protein -
  R8807_RS17470 (FGAF1267_34110) priC 3523583..3524110 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  R8807_RS17475 (FGAF1267_34120) rsmS 3524124..3524285 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1046771 R8807_RS17445 WP_001195025.1 3519385..3519990(-) (recR) [Escherichia coli isolate F1267]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1046771 R8807_RS17445 WP_001195025.1 3519385..3519990(-) (recR) [Escherichia coli isolate F1267]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443