Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | NTHIC486_RS00585 | Genome accession | NZ_CP007471 |
| Coordinates | 117670..120240 (-) | Length | 856 a.a. |
| NCBI ID | WP_005686072.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain C486 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 112670..125240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NTHIC486_RS00560 (NTHIC486_00112) | pdxH | 112764..113396 (-) | 633 | WP_040035016.1 | pyridoxamine 5'-phosphate oxidase | - |
| NTHIC486_RS00565 (NTHIC486_00113) | - | 113589..114296 (+) | 708 | WP_038440326.1 | 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | - |
| NTHIC486_RS00575 (NTHIC486_00114) | rnr | 114488..116836 (+) | 2349 | WP_044345177.1 | ribonuclease R | - |
| NTHIC486_RS00580 (NTHIC486_00115) | rlmB | 116892..117632 (+) | 741 | WP_005655733.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| NTHIC486_RS00585 (NTHIC486_00116) | clpC | 117670..120240 (-) | 2571 | WP_005686072.1 | ATP-dependent chaperone ClpB | Regulator |
| NTHIC486_RS00590 (NTHIC486_00117) | - | 120368..120931 (-) | 564 | WP_005686070.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| NTHIC486_RS00595 (NTHIC486_00118) | - | 121249..121551 (-) | 303 | WP_005651366.1 | cell division protein ZapA | - |
| NTHIC486_RS00600 (NTHIC486_00119) | polA | 121700..124492 (+) | 2793 | WP_005686066.1 | DNA polymerase I | - |
| NTHIC486_RS00605 (NTHIC486_00120) | - | 124507..124698 (+) | 192 | Protein_120 | tRNA (uracil-5-)-methyltransferase | - |
Sequence
Protein
Download Length: 856 a.a. Molecular weight: 95797.24 Da Isoelectric Point: 4.9855
>NTDB_id=104669 NTHIC486_RS00585 WP_005686072.1 117670..120240(-) (clpC) [Haemophilus influenzae strain C486]
MNIEKFTTKFQEALSEAQSLAIGKDNQFIEPVHLLTALLNQQGGSIAPILTASGVNVALLRNELKTELNKLPQVIGNGGD
VQLSRQLINLLNLCDKFAQQNQDKFISSELFLLAALEERGTISDILKKCGAKKEQISQAIQQIRGGQNVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELVEKEREYAELEEVWKSEKATLSGSQHIKQELD
TAKTELEQARRAGDLAKMSELQYGRIPALEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPISSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGNKDESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPSKVVTIDYVNSEVQARQ
MNIEKFTTKFQEALSEAQSLAIGKDNQFIEPVHLLTALLNQQGGSIAPILTASGVNVALLRNELKTELNKLPQVIGNGGD
VQLSRQLINLLNLCDKFAQQNQDKFISSELFLLAALEERGTISDILKKCGAKKEQISQAIQQIRGGQNVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELVEKEREYAELEEVWKSEKATLSGSQHIKQELD
TAKTELEQARRAGDLAKMSELQYGRIPALEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPISSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGNKDESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPSKVVTIDYVNSEVQARQ
Nucleotide
Download Length: 2571 bp
>NTDB_id=104669 NTHIC486_RS00585 WP_005686072.1 117670..120240(-) (clpC) [Haemophilus influenzae strain C486]
ATGAACATTGAAAAATTTACGACAAAATTCCAAGAAGCGTTAAGCGAAGCACAATCACTTGCTATAGGAAAAGACAATCA
ATTTATTGAACCTGTGCATTTATTGACCGCACTTTTAAATCAACAGGGCGGCTCTATTGCGCCAATTTTGACAGCAAGTG
GTGTAAATGTGGCGTTATTGCGTAATGAATTAAAGACAGAACTAAATAAATTGCCGCAAGTGATTGGCAATGGTGGAGAT
GTACAACTTTCACGCCAGCTTATTAATCTACTTAATTTATGCGATAAATTCGCACAGCAAAACCAAGATAAATTTATTTC
GAGCGAATTGTTTTTGCTTGCAGCTTTAGAAGAACGGGGAACGATCAGCGATATTTTGAAAAAGTGCGGTGCGAAAAAAG
AGCAAATTTCGCAAGCCATTCAGCAAATTAGAGGGGGACAAAACGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCA
TTAGAAAAATATACGATTGATTTAACCGCTCGTGCAGAAAGTGGCAAACTTGATCCTGTCATTGGGCGTGATGAAGAAAT
TCGTCGAGCTATTCAAGTATTACAACGTCGTACCAAAAACAACCCAGTGTTAATTGGTGAACCAGGTGTAGGGAAAACGG
CGATTGTCGAAGGCTTGGCACAGCGCATCGTAAACGGAGAAGTGCCAGAAGGTTTGAAAAATAAACGCGTGCTTTCATTA
GATATGGGTGCATTGATTGCTGGTGCAAAATATCGCGGAGAATTTGAAGAACGTTTAAAAGCGGTGCTCAATGAACTTTC
TAAAGAAGAAGGTCGCGTTATCCTCTTTATTGATGAAATTCATACTATGGTTGGCGCGGGTAAAACCGATGGTGCGATGG
ATGCGGGTAACTTATTAAAACCAAGTTTAGCGCGCGGTGAATTACATTGTGTGGGTGCAACCACTCTAGATGAATATCGT
CAATATATCGAAAAAGATGCCGCACTTGAACGCCGTTTCCAAAAAGTATTTGTGGACGAACCAAGTGTAGAAGATACCAT
TGCTATCTTACGTGGTTTGAAAGAACGCTATGAAATTCATCATCACGTGGATATTACTGACCCTGCGATTGTCGCTGCCG
CAACGCTTTCACATCGTTATATTTCCGATCGTCAATTGCCGGATAAAGCCATTGATTTGATCGATGAAGCGGCGTCTAGC
ATTCGTATGGAAATAGATTCTAAACCTGAACCGCTTGATCGCCTTGAACGTCGTATTATCCAACTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGACGAAGCAAGTCGCAAACGTTTAGAAATGTTAGAGAAAGAATTGGTTGAAAAAGAACGTG
AATATGCCGAACTTGAAGAAGTGTGGAAATCTGAAAAAGCAACGCTTTCTGGCTCTCAACATATTAAACAAGAATTAGAT
ACTGCAAAAACCGAACTAGAACAAGCTCGTCGCGCGGGGGATTTAGCGAAAATGTCAGAGTTGCAATATGGACGCATCCC
TGCTCTTGAAAAGCAACTCGAGCAAGCTGAAACCAGCGAAGGAAAAGAAATGACGCTTTTACGCTATCGTGTCACGGATG
AAGAAATCGCAGAAGTGCTTTCTAAAGCCACAGGTATTCCTGTATCCAAAATGATGGAAGGCGAGAAAGAAAAACTCTTG
CGCATGGAAGATGAACTACATAAACGAGTGATTGGTCAAGAAGAAGCAGTTGATGCGGTAGCAAACGCGATTCGTCGTAG
CCGTGCAGGTCTTTCCGATCCTAATCGCCCAATTAGTTCTTTCTTGTTCCTAGGGCCAACAGGTGTAGGTAAAACAGAGC
TTTGTAAAACTTTGGCTAAATTCTTGTTTGATAGTGAAGATGCGATGGTGCGCATTGATATGTCAGAGTTTATGGAAAAG
CACAGTGTCTCTCGTTTAGTGGGTGCGCCTCCAGGCTATGTCGGCTATGAAGAAGGCGGTTATTTAACTGAAGCTGTTCG
TCGTCGTCCATATTCAGTGATCTTATTAGATGAAGTTGAAAAAGCCCATGCGGATGTATTCAACATTTTATTACAAGTGT
TGGATGATGGTCGTTTAACTGACGGGCAAGGTCGTACTGTGGACTTCCGTAATACGGTGGTAATTATGACCTCTAACTTG
GGTTCTGATTTAATCCAAGGTAACAAAGACGAAAGCTATAGCGAAATGAAAGCCTTAGTGATGTCAGTGGTTAGCCAACA
TTTCCGTCCGGAATTCATTAACCGTATTGACGAAACCGTGGTATTCCATCCGCTTGGTAAAGAGAATATCCGTGCGATTG
CAAGCATCCAATTAGAACGCTTAGCAAAACGTATGGAAACTCGTGGTTACGAATTGGTGTTTACCGACGCTTTATTAGAT
TTCATTGGCGAAGTGGGTTATGACCCAATTTATGGTGCGCGCCCATTAAAACGAGCCATTCAACAAGAAATTGAAAATAG
CTTGGCGCAACAAATTCTATCTGGTGCGTTATTACCAAGTAAGGTTGTTACCATTGATTATGTCAATTCAGAAGTTCAAG
CGAGACAATAA
ATGAACATTGAAAAATTTACGACAAAATTCCAAGAAGCGTTAAGCGAAGCACAATCACTTGCTATAGGAAAAGACAATCA
ATTTATTGAACCTGTGCATTTATTGACCGCACTTTTAAATCAACAGGGCGGCTCTATTGCGCCAATTTTGACAGCAAGTG
GTGTAAATGTGGCGTTATTGCGTAATGAATTAAAGACAGAACTAAATAAATTGCCGCAAGTGATTGGCAATGGTGGAGAT
GTACAACTTTCACGCCAGCTTATTAATCTACTTAATTTATGCGATAAATTCGCACAGCAAAACCAAGATAAATTTATTTC
GAGCGAATTGTTTTTGCTTGCAGCTTTAGAAGAACGGGGAACGATCAGCGATATTTTGAAAAAGTGCGGTGCGAAAAAAG
AGCAAATTTCGCAAGCCATTCAGCAAATTAGAGGGGGACAAAACGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCA
TTAGAAAAATATACGATTGATTTAACCGCTCGTGCAGAAAGTGGCAAACTTGATCCTGTCATTGGGCGTGATGAAGAAAT
TCGTCGAGCTATTCAAGTATTACAACGTCGTACCAAAAACAACCCAGTGTTAATTGGTGAACCAGGTGTAGGGAAAACGG
CGATTGTCGAAGGCTTGGCACAGCGCATCGTAAACGGAGAAGTGCCAGAAGGTTTGAAAAATAAACGCGTGCTTTCATTA
GATATGGGTGCATTGATTGCTGGTGCAAAATATCGCGGAGAATTTGAAGAACGTTTAAAAGCGGTGCTCAATGAACTTTC
TAAAGAAGAAGGTCGCGTTATCCTCTTTATTGATGAAATTCATACTATGGTTGGCGCGGGTAAAACCGATGGTGCGATGG
ATGCGGGTAACTTATTAAAACCAAGTTTAGCGCGCGGTGAATTACATTGTGTGGGTGCAACCACTCTAGATGAATATCGT
CAATATATCGAAAAAGATGCCGCACTTGAACGCCGTTTCCAAAAAGTATTTGTGGACGAACCAAGTGTAGAAGATACCAT
TGCTATCTTACGTGGTTTGAAAGAACGCTATGAAATTCATCATCACGTGGATATTACTGACCCTGCGATTGTCGCTGCCG
CAACGCTTTCACATCGTTATATTTCCGATCGTCAATTGCCGGATAAAGCCATTGATTTGATCGATGAAGCGGCGTCTAGC
ATTCGTATGGAAATAGATTCTAAACCTGAACCGCTTGATCGCCTTGAACGTCGTATTATCCAACTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGACGAAGCAAGTCGCAAACGTTTAGAAATGTTAGAGAAAGAATTGGTTGAAAAAGAACGTG
AATATGCCGAACTTGAAGAAGTGTGGAAATCTGAAAAAGCAACGCTTTCTGGCTCTCAACATATTAAACAAGAATTAGAT
ACTGCAAAAACCGAACTAGAACAAGCTCGTCGCGCGGGGGATTTAGCGAAAATGTCAGAGTTGCAATATGGACGCATCCC
TGCTCTTGAAAAGCAACTCGAGCAAGCTGAAACCAGCGAAGGAAAAGAAATGACGCTTTTACGCTATCGTGTCACGGATG
AAGAAATCGCAGAAGTGCTTTCTAAAGCCACAGGTATTCCTGTATCCAAAATGATGGAAGGCGAGAAAGAAAAACTCTTG
CGCATGGAAGATGAACTACATAAACGAGTGATTGGTCAAGAAGAAGCAGTTGATGCGGTAGCAAACGCGATTCGTCGTAG
CCGTGCAGGTCTTTCCGATCCTAATCGCCCAATTAGTTCTTTCTTGTTCCTAGGGCCAACAGGTGTAGGTAAAACAGAGC
TTTGTAAAACTTTGGCTAAATTCTTGTTTGATAGTGAAGATGCGATGGTGCGCATTGATATGTCAGAGTTTATGGAAAAG
CACAGTGTCTCTCGTTTAGTGGGTGCGCCTCCAGGCTATGTCGGCTATGAAGAAGGCGGTTATTTAACTGAAGCTGTTCG
TCGTCGTCCATATTCAGTGATCTTATTAGATGAAGTTGAAAAAGCCCATGCGGATGTATTCAACATTTTATTACAAGTGT
TGGATGATGGTCGTTTAACTGACGGGCAAGGTCGTACTGTGGACTTCCGTAATACGGTGGTAATTATGACCTCTAACTTG
GGTTCTGATTTAATCCAAGGTAACAAAGACGAAAGCTATAGCGAAATGAAAGCCTTAGTGATGTCAGTGGTTAGCCAACA
TTTCCGTCCGGAATTCATTAACCGTATTGACGAAACCGTGGTATTCCATCCGCTTGGTAAAGAGAATATCCGTGCGATTG
CAAGCATCCAATTAGAACGCTTAGCAAAACGTATGGAAACTCGTGGTTACGAATTGGTGTTTACCGACGCTTTATTAGAT
TTCATTGGCGAAGTGGGTTATGACCCAATTTATGGTGCGCGCCCATTAAAACGAGCCATTCAACAAGAAATTGAAAATAG
CTTGGCGCAACAAATTCTATCTGGTGCGTTATTACCAAGTAAGGTTGTTACCATTGATTATGTCAATTCAGAAGTTCAAG
CGAGACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.14 |
100 |
0.481 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.231 |
100 |
0.444 |
| clpE | Streptococcus pneumoniae TIGR4 |
48.827 |
79.673 |
0.389 |
| clpE | Streptococcus mutans UA159 |
48.311 |
79.556 |
0.384 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
45.326 |
82.477 |
0.374 |
| clpE | Streptococcus pneumoniae Rx1 |
45.138 |
80.491 |
0.363 |
| clpE | Streptococcus pneumoniae D39 |
45.138 |
80.491 |
0.363 |
| clpE | Streptococcus pneumoniae R6 |
45.138 |
80.491 |
0.363 |