Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8950_RS03320 Genome accession   NZ_AP028355
Coordinates   635569..636006 (+) Length   145 a.a.
NCBI ID   WP_060809708.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10539     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630569..641006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8950_RS03290 (B10539_06540) - 631027..631410 (+) 384 Protein_636 potassium-transporting ATPase subunit C -
  R8950_RS09095 - 631404..632881 (+) 1478 Protein_637 DUF4118 domain-containing protein -
  R8950_RS03305 (B10539_06580) uvrB 632983..634956 (-) 1974 WP_317725380.1 excinuclease ABC subunit UvrB -
  R8950_RS03310 (B10539_06590) - 635110..635340 (+) 231 WP_002852327.1 hypothetical protein -
  R8950_RS03315 (B10539_06600) - 635330..635572 (+) 243 WP_002854947.1 hypothetical protein -
  R8950_RS03320 (B10539_06610) Cj0683 635569..636006 (+) 438 WP_060809708.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8950_RS03325 (B10539_06620) priA 635988..637841 (+) 1854 WP_317727466.1 primosomal protein N' -
  R8950_RS03330 cipA 637851..639247 (-) 1397 Protein_643 DUF2972 domain-containing protein -
  R8950_RS03335 (B10539_06650) ispG 639393..640466 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16753.71 Da        Isoelectric Point: 8.0993

>NTDB_id=104669 R8950_RS03320 WP_060809708.1 635569..636006(+) (Cj0683) [Campylobacter jejuni strain BCH-10539]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCTGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=104669 R8950_RS03320 WP_060809708.1 635569..636006(+) (Cj0683) [Campylobacter jejuni strain BCH-10539]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTACAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment