Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8497_RS07270 Genome accession   NZ_AP028352
Coordinates   1418620..1420032 (-) Length   470 a.a.
NCBI ID   WP_100626162.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10518     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413620..1425032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8497_RS07245 (B10518_14250) - 1413944..1414708 (+) 765 WP_002855821.1 TSUP family transporter -
  R8497_RS07250 (B10518_14260) ctsF 1414701..1415882 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R8497_RS07255 (B10518_14270) ctsE 1415879..1417438 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8497_RS07260 (B10518_14280) ctsX 1417428..1418015 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8497_RS07265 (B10518_14290) ctsP 1418019..1418627 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8497_RS07270 (B10518_14300) ctsD 1418620..1420032 (-) 1413 WP_100626162.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8497_RS07275 (B10518_14310) ctsR 1420010..1420321 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8497_RS07280 (B10518_14320) nifJ 1420345..1423905 (-) 3561 WP_052790037.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8497_RS07285 (B10518_14330) - 1423998..1424639 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53066.60 Da        Isoelectric Point: 6.6184

>NTDB_id=104659 R8497_RS07270 WP_100626162.1 1418620..1420032(-) (ctsD) [Campylobacter jejuni strain BCH-10518]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSANAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=104659 R8497_RS07270 WP_100626162.1 1418620..1420032(-) (ctsD) [Campylobacter jejuni strain BCH-10518]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGTATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGCAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.787

100

0.998

Multiple sequence alignment