Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8859_RS07540 Genome accession   NZ_OY754407
Coordinates   1554330..1554806 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli isolate F247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549330..1559806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8859_RS07490 (FGAF247_14380) - 1549447..1549678 (+) 232 Protein_1479 IS66 family transposase -
  R8859_RS07495 - 1549650..1549796 (-) 147 Protein_1480 IS4 family transposase -
  R8859_RS07500 (FGAF247_14390) - 1549919..1550590 (-) 672 WP_000906844.1 FadR/GntR family transcriptional regulator -
  R8859_RS07505 (FGAF247_14400) - 1550638..1550997 (-) 360 WP_001361993.1 hypothetical protein -
  R8859_RS07510 - 1551319..1551601 (+) 283 Protein_1483 IS21 family transposase -
  R8859_RS07515 (FGAF247_14410) tnpA 1551756..1552043 (+) 288 WP_000186597.1 IS66 family insertion sequence element accessory protein TnpA -
  R8859_RS07520 (FGAF247_14420) tnpB 1552037..1552375 (+) 339 WP_000950719.1 IS66 family insertion sequence element accessory protein TnpB -
  R8859_RS07525 - 1552529..1552687 (+) 159 Protein_1486 hypothetical protein -
  R8859_RS07530 (FGAF247_14430) - 1552919..1553737 (+) 819 WP_001610805.1 DUF932 domain-containing protein -
  R8859_RS07535 (FGAF247_14440) - 1553829..1554314 (+) 486 WP_063100024.1 antirestriction protein -
  R8859_RS07540 (FGAF247_14450) radC 1554330..1554806 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  R8859_RS07545 (FGAF247_14460) - 1554869..1555090 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  R8859_RS07550 (FGAF247_14470) - 1555164..1555571 (+) 408 WP_001389100.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8859_RS07555 (FGAF247_14480) - 1556113..1557360 (-) 1248 WP_001197023.1 oligosaccharide MFS transporter -
  R8859_RS07560 (FGAF247_14490) - 1557432..1558346 (-) 915 WP_001274887.1 aminoimidazole riboside kinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1046571 R8859_RS07540 WP_001186773.1 1554330..1554806(+) (radC) [Escherichia coli isolate F247]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1046571 R8859_RS07540 WP_001186773.1 1554330..1554806(+) (radC) [Escherichia coli isolate F247]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392