Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8858_RS20115 Genome accession   NZ_OY754398
Coordinates   4163812..4164288 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli isolate F437     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4158812..4169288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8858_RS25190 - 4160090..4160290 (-) 201 WP_112022106.1 TA system toxin CbtA family protein -
  R8858_RS20095 (FGAF437_38780) istA 4160471..4162012 (+) 1542 WP_001518966.1 IS21-like element ISEc12 family transposase -
  R8858_RS20100 (FGAF437_38790) istB 4162027..4162773 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  R8858_RS20105 (FGAF437_38800) - 4162997..4163365 (-) 369 WP_021548605.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8858_RS20110 (FGAF437_38820) - 4163528..4163749 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  R8858_RS20115 (FGAF437_38830) radC 4163812..4164288 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  R8858_RS20120 (FGAF437_38840) - 4164304..4164777 (-) 474 WP_001350782.1 antirestriction protein -
  R8858_RS20125 (FGAF437_38850) - 4165119..4165937 (-) 819 WP_001234656.1 DUF932 domain-containing protein -
  R8858_RS20130 (FGAF437_38860) - 4166055..4166250 (-) 196 Protein_3938 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=1046534 R8858_RS20115 WP_001186775.1 4163812..4164288(-) (radC) [Escherichia coli isolate F437]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1046534 R8858_RS20115 WP_001186775.1 4163812..4164288(-) (radC) [Escherichia coli isolate F437]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399