Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8803_RS18845 Genome accession   NZ_OY754392
Coordinates   3841445..3841921 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli isolate F719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3836445..3846921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8803_RS18805 (FGAF719_36280) - 3836512..3837209 (+) 698 WP_223571425.1 IS1 family transposase -
  R8803_RS18810 (FGAF719_36290) - 3837341..3838474 (+) 1134 Protein_3680 tyrosine-type recombinase/integrase -
  R8803_RS18815 (FGAF719_36300) - 3838567..3839415 (-) 849 WP_001280536.1 DUF4942 domain-containing protein -
  R8803_RS18820 (FGAF719_36310) - 3839500..3839697 (-) 198 WP_000839228.1 DUF957 domain-containing protein -
  R8803_RS18825 (FGAF719_36320) - 3839709..3840197 (-) 489 WP_000761710.1 DUF5983 family protein -
  R8803_RS18830 (FGAF719_36330) - 3840194..3840571 (-) 378 WP_000854695.1 TA system toxin CbtA family protein -
  R8803_RS18835 (FGAF719_36340) - 3840618..3840992 (-) 375 WP_016243360.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8803_RS18840 (FGAF719_36360) - 3841155..3841376 (-) 222 WP_000692307.1 DUF987 domain-containing protein -
  R8803_RS18845 (FGAF719_36370) radC 3841445..3841921 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  R8803_RS18850 (FGAF719_36380) - 3841937..3842137 (-) 201 Protein_3688 antirestriction protein -
  R8803_RS18855 (FGAF719_36390) istA 3842239..3843411 (+) 1173 WP_000952428.1 IS21-like element ISEc62 family transposase -
  R8803_RS18860 (FGAF719_36400) istB 3843411..3844205 (+) 795 WP_000544809.1 IS21-like element helper ATPase IstB -
  R8803_RS18865 (FGAF719_36410) - 3844264..3844545 (-) 282 Protein_3691 antirestriction protein -
  R8803_RS18870 (FGAF719_36420) - 3844627..3845445 (-) 819 WP_001241366.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1046449 R8803_RS18845 WP_001186773.1 3841445..3841921(-) (radC) [Escherichia coli isolate F719]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1046449 R8803_RS18845 WP_001186773.1 3841445..3841921(-) (radC) [Escherichia coli isolate F719]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTGGGTGGCAACCAGGTTTTCTCCTTTGCCGAGCACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392