Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8803_RS17785 Genome accession   NZ_OY754392
Coordinates   3625124..3625729 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate F719     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3620124..3630729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8803_RS17765 (FGAF719_34230) aes 3620265..3621224 (+) 960 WP_113319148.1 acetyl esterase -
  R8803_RS17770 (FGAF719_34240) hemH 3621221..3622183 (-) 963 WP_001250120.1 ferrochelatase -
  R8803_RS17775 (FGAF719_34250) adk 3622315..3622959 (-) 645 WP_001696974.1 adenylate kinase -
  R8803_RS17780 (FGAF719_34260) htpG 3623140..3625014 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8803_RS17785 (FGAF719_34270) recR 3625124..3625729 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  R8803_RS17790 (FGAF719_34280) ybaB 3625729..3626058 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  R8803_RS17795 (FGAF719_34290) dnaX 3626111..3628042 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  R8803_RS17800 (FGAF719_34300) apt 3628171..3628722 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8803_RS17805 (FGAF719_34310) ybaN 3628875..3629252 (-) 378 WP_001188905.1 DUF454 family protein -
  R8803_RS17810 (FGAF719_34320) priC 3629322..3629849 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  R8803_RS17815 (FGAF719_34330) rsmS 3629863..3630024 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1046444 R8803_RS17785 WP_001195025.1 3625124..3625729(-) (recR) [Escherichia coli isolate F719]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1046444 R8803_RS17785 WP_001195025.1 3625124..3625729(-) (recR) [Escherichia coli isolate F719]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment