Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8926_RS17220 Genome accession   NZ_OY754389
Coordinates   3469650..3470255 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate F637     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3464650..3475255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8926_RS17200 (FGAF637_33480) aes 3464687..3465646 (+) 960 WP_000801848.1 acetyl esterase -
  R8926_RS17205 (FGAF637_33490) hemH 3465643..3466605 (-) 963 WP_001250117.1 ferrochelatase -
  R8926_RS17210 (FGAF637_33500) adk 3466841..3467485 (-) 645 WP_001220233.1 adenylate kinase -
  R8926_RS17215 (FGAF637_33510) htpG 3467666..3469540 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8926_RS17220 (FGAF637_33520) recR 3469650..3470255 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  R8926_RS17225 (FGAF637_33530) ybaB 3470255..3470584 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  R8926_RS17230 (FGAF637_33540) dnaX 3470637..3472568 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  R8926_RS17235 (FGAF637_33550) apt 3472697..3473248 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8926_RS17240 (FGAF637_33560) ybaN 3473401..3473778 (-) 378 WP_001188905.1 DUF454 family protein -
  R8926_RS17245 (FGAF637_33570) priC 3473848..3474375 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  R8926_RS17250 (FGAF637_33580) rsmS 3474389..3474550 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1046367 R8926_RS17220 WP_001195025.1 3469650..3470255(-) (recR) [Escherichia coli isolate F637]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1046367 R8926_RS17220 WP_001195025.1 3469650..3470255(-) (recR) [Escherichia coli isolate F637]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment