Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8612_RS05825 Genome accession   NZ_AP028351
Coordinates   1143707..1144153 (-) Length   148 a.a.
NCBI ID   WP_220381229.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10460     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138707..1149153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS05810 (B10460_11420) flgH 1139957..1140655 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  R8612_RS05815 (B10460_11430) ispG 1140739..1141812 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8612_RS05820 (B10460_11440) - 1141872..1143710 (-) 1839 WP_220381230.1 primosomal protein N' -
  R8612_RS05825 (B10460_11450) Cj0683 1143707..1144153 (-) 447 WP_220381229.1 type II secretion system protein Machinery gene
  R8612_RS05830 (B10460_11460) - 1144150..1144395 (-) 246 WP_002776428.1 hypothetical protein -
  R8612_RS05835 (B10460_11470) - 1144385..1144615 (-) 231 WP_002776426.1 hypothetical protein -
  R8612_RS05840 (B10460_11480) uvrB 1144769..1146742 (+) 1974 WP_052784739.1 excinuclease ABC subunit UvrB -
  R8612_RS05845 (B10460_11490) - 1146777..1148201 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17316.21 Da        Isoelectric Point: 8.4538

>NTDB_id=104629 R8612_RS05825 WP_220381229.1 1143707..1144153(-) (Cj0683) [Campylobacter coli strain BCH-10460]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWIDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=104629 R8612_RS05825 WP_220381229.1 1143707..1144153(-) (Cj0683) [Campylobacter coli strain BCH-10460]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGATTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574

Multiple sequence alignment