Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8951_RS14585 Genome accession   NZ_OY754382
Coordinates   3023104..3023580 (-) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli isolate F138     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3018104..3028580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8951_RS14540 (FGAF138_28190) infA 3018937..3019155 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  R8951_RS14550 (FGAF138_28200) - 3019645..3020487 (-) 843 WP_063084795.1 DUF4942 domain-containing protein -
  R8951_RS14555 (FGAF138_28210) - 3020572..3020769 (-) 198 WP_063080560.1 DUF957 domain-containing protein -
  R8951_RS14560 (FGAF138_28220) - 3020781..3021269 (-) 489 WP_086619515.1 DUF5983 family protein -
  R8951_RS14565 (FGAF138_28230) cbtA 3021266..3021643 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  R8951_RS14570 (FGAF138_28240) - 3021733..3022101 (-) 369 WP_096093954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8951_RS14575 (FGAF138_28250) - 3022151..3022795 (-) 645 WP_112908987.1 antitoxin of toxin-antitoxin stability system -
  R8951_RS14580 (FGAF138_28260) - 3022814..3023035 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  R8951_RS14585 (FGAF138_28270) radC 3023104..3023580 (-) 477 WP_001384029.1 RadC family protein Machinery gene
  R8951_RS14590 (FGAF138_28280) - 3023595..3024080 (-) 486 WP_000214317.1 antirestriction protein -
  R8951_RS14595 (FGAF138_28290) - 3024171..3024989 (-) 819 WP_317746183.1 DUF932 domain-containing protein -
  R8951_RS14600 (FGAF138_28300) - 3025316..3028162 (-) 2847 WP_258752342.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=1046282 R8951_RS14585 WP_001384029.1 3023104..3023580(-) (radC) [Escherichia coli isolate F138]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1046282 R8951_RS14585 WP_001384029.1 3023104..3023580(-) (radC) [Escherichia coli isolate F138]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAACCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGGCTTATCACTGAGCGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392