Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8612_RS03600 | Genome accession | NZ_AP028351 |
| Coordinates | 723887..724192 (-) | Length | 101 a.a. |
| NCBI ID | WP_002777852.1 | Uniprot ID | A0A3Z9CUC7 |
| Organism | Campylobacter coli strain BCH-10460 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 718887..729192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8612_RS03565 (B10460_07050) | - | 719302..720063 (+) | 762 | WP_072212081.1 | ATP-binding protein | - |
| R8612_RS03570 (B10460_07060) | - | 720060..720743 (+) | 684 | WP_150966194.1 | 3-methyladenine DNA glycosylase | - |
| R8612_RS03575 (B10460_07070) | thiD | 720743..721555 (+) | 813 | WP_002786353.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8612_RS03580 (B10460_07080) | thiE | 721545..722177 (+) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| R8612_RS03585 (B10460_07090) | - | 722155..722784 (+) | 630 | WP_052780495.1 | uroporphyrinogen-III synthase | - |
| R8612_RS03590 (B10460_07100) | - | 722777..723229 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8612_RS03595 (B10460_07110) | - | 723226..723894 (-) | 669 | WP_052780494.1 | hypothetical protein | - |
| R8612_RS03600 (B10460_07120) | ctsT | 723887..724192 (-) | 306 | WP_002777852.1 | hypothetical protein | Machinery gene |
| R8612_RS03605 (B10460_07130) | proC | 724189..724926 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8612_RS03610 (B10460_07140) | fliW | 724926..725315 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8612_RS03615 (B10460_07150) | - | 725479..726126 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| R8612_RS03620 (B10460_07160) | lon | 726142..728517 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| R8612_RS03625 (B10460_07170) | rpsR | 728573..728833 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12396.25 Da Isoelectric Point: 6.0617
>NTDB_id=104625 R8612_RS03600 WP_002777852.1 723887..724192(-) (ctsT) [Campylobacter coli strain BCH-10460]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=104625 R8612_RS03600 WP_002777852.1 723887..724192(-) (ctsT) [Campylobacter coli strain BCH-10460]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTACAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTACAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |