Detailed information NTG0104623

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8612_RS03260
• Genome accession: NZ_AP028351
• Coordinates: 656696..657640 (-)
• Length: 314 a.a.
• NCBI ID: WP_002791232.1
• Uniprot ID: A0A3Z9VJK7
• Organism: Campylobacter coli strain BCH-10460
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 651696..662640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8612_RS03235 (B10460_06390)	-	651799..652362 (+)	564	WP_002777235.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
R8612_RS03240 (B10460_06400)	rfaD	652359..653312 (+)	954	WP_249620900.1	ADP-glyceromanno-heptose 6-epimerase	-
R8612_RS03245 (B10460_06410)	rfaE1	653305..654690 (+)	1386	WP_317647466.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8612_RS03250 (B10460_06420)	gmhA	654687..655247 (+)	561	WP_002796916.1	D-sedoheptulose 7-phosphate isomerase	-
R8612_RS03255 (B10460_06430)	-	655259..656713 (+)	1455	WP_002791237.1	hypothetical protein	-
R8612_RS03260 (B10460_06440)	waaF	656696..657640 (-)	945	WP_002791232.1	lipopolysaccharide heptosyltransferase II	Regulator
R8612_RS03265 (B10460_06450)	-	657699..658514 (+)	816	WP_002804038.1	glycosyltransferase family 2 protein	-
R8612_RS03270 (B10460_06460)	-	658533..658712 (-)	180	WP_264378562.1	hypothetical protein	-
R8612_RS03275 (B10460_06470)	-	658734..658949 (-)	216	WP_317647467.1	adenylyltransferase/cytidyltransferase family protein	-
R8612_RS03280 (B10460_06480)	-	658952..660001 (-)	1050	WP_002804034.1	asparagine synthase C-terminal domain-containing protein	-
R8612_RS03285 (B10460_06490)	-	659985..661301 (-)	1317	WP_233917858.1	hypothetical protein	-
R8612_RS03290 (B10460_06500)	-	661430..662629 (+)	1200	WP_002830080.1	glycosyltransferase family 8 protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36168.65 Da
• Isoelectric Point: 10.1355

>NTDB_id=104623 R8612_RS03260 WP_002791232.1 656696..657640(-) (waaF) [Campylobacter coli strain BCH-10460]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELDKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKICPLKHHKCMKDLKPEMVLEKLKFDT

Nucleotide

• Length: 945 bp

>NTDB_id=104623 R8612_RS03260 WP_002791232.1 656696..657640(-) (waaF) [Campylobacter coli strain BCH-10460]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGTAAAGAACTTGATAAAATCGATCTTAGCTTCACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTGA
AAAATCTTTGCAACAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCATATAGCTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAATGGTTTTAGAAAAATTAAAATTTGATACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

3D structure

• AlphaFold DB: A0A3Z9VJK7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	92.926	99.045	0.92