Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8612_RS02135 Genome accession   NZ_AP028351
Coordinates   436622..437590 (-) Length   322 a.a.
NCBI ID   WP_317647444.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10460     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431622..442590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS02115 (B10460_04110) - 433137..433769 (-) 633 WP_002799190.1 hypothetical protein -
  R8612_RS02120 (B10460_04120) - 433935..434924 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  R8612_RS02125 (B10460_04130) - 434939..435694 (-) 756 WP_052780631.1 ABC transporter ATP-binding protein -
  R8612_RS02130 (B10460_04140) - 435691..436629 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  R8612_RS02135 (B10460_04150) ceuB 436622..437590 (-) 969 WP_317647444.1 ABC transporter permease Machinery gene
  R8612_RS02140 (B10460_04160) - 437723..438616 (-) 894 WP_376842372.1 phospholipase A -
  R8612_RS02145 (B10460_04170) - 438715..439290 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  R8612_RS02150 (B10460_04180) - 439353..440660 (+) 1308 WP_317647445.1 NFACT family protein -
  R8612_RS02155 (B10460_04190) - 440662..441000 (+) 339 WP_002777761.1 hypothetical protein -
  R8612_RS02160 (B10460_04200) - 441009..441734 (+) 726 WP_002792130.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35581.41 Da        Isoelectric Point: 9.5069

>NTDB_id=104617 R8612_RS02135 WP_317647444.1 436622..437590(-) (ceuB) [Campylobacter coli strain BCH-10460]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLTLNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104617 R8612_RS02135 WP_317647444.1 436622..437590(-) (ceuB) [Campylobacter coli strain BCH-10460]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTACTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment