Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8837_RS23210 Genome accession   NZ_OY754371
Coordinates   4748563..4749168 (+) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli isolate F374     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4743563..4754168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8837_RS23180 (FGAF374_44530) rsmS 4744265..4744429 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  R8837_RS23185 (FGAF374_44540) priC 4744443..4744970 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  R8837_RS23190 (FGAF374_44550) ybaN 4745040..4745417 (+) 378 WP_001188905.1 DUF454 family protein -
  R8837_RS23195 (FGAF374_44560) apt 4745570..4746121 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8837_RS23200 (FGAF374_44570) dnaX 4746250..4748181 (+) 1932 WP_000121995.1 DNA polymerase III subunit gamma/tau -
  R8837_RS23205 (FGAF374_44580) ybaB 4748234..4748563 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  R8837_RS23210 (FGAF374_44590) recR 4748563..4749168 (+) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  R8837_RS23215 (FGAF374_44600) htpG 4749278..4751152 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8837_RS23220 (FGAF374_44610) adk 4751333..4751977 (+) 645 WP_001220233.1 adenylate kinase -
  R8837_RS23225 (FGAF374_44620) hemH 4752109..4753071 (+) 963 WP_001250117.1 ferrochelatase -
  R8837_RS23230 (FGAF374_44630) aes 4753068..4754027 (-) 960 WP_000801694.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=1046148 R8837_RS23210 WP_001195026.1 4748563..4749168(+) (recR) [Escherichia coli isolate F374]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1046148 R8837_RS23210 WP_001195026.1 4748563..4749168(+) (recR) [Escherichia coli isolate F374]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTACCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448