Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   R8837_RS10605 Genome accession   NZ_OY754371
Coordinates   2117585..2118577 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli isolate F374     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112585..2123577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8837_RS10575 (FGAF374_20380) - 2113057..2113920 (+) 864 WP_001223109.1 tetratricopeptide repeat protein -
  R8837_RS10580 (FGAF374_20390) pphB 2113945..2114601 (+) 657 WP_001139307.1 protein-serine/threonine phosphatase -
  R8837_RS10585 (FGAF374_20400) - 2114643..2114879 (-) 237 WP_000562983.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  R8837_RS10590 (FGAF374_20410) - 2114890..2116317 (-) 1428 WP_000863184.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  R8837_RS10595 (FGAF374_20420) - 2116317..2116910 (-) 594 WP_001237176.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  R8837_RS10600 (FGAF374_20430) - 2117057..2117464 (+) 408 WP_001208065.1 MarR family winged helix-turn-helix transcriptional regulator -
  R8837_RS10605 (FGAF374_20440) rpoS 2117585..2118577 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  R8837_RS10610 (FGAF374_20450) nlpD 2118640..2119779 (-) 1140 WP_001272592.1 murein hydrolase activator NlpD -
  R8837_RS10615 (FGAF374_20460) pcm 2119919..2120545 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  R8837_RS10620 (FGAF374_20470) surE 2120539..2121300 (-) 762 WP_001305779.1 5'/3'-nucleotidase SurE -
  R8837_RS10625 (FGAF374_20480) truD 2121281..2122330 (-) 1050 WP_000568953.1 tRNA pseudouridine(13) synthase TruD -
  R8837_RS10630 (FGAF374_20490) ispF 2122327..2122806 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  R8837_RS10635 (FGAF374_20500) ispD 2122806..2123516 (-) 711 WP_000246141.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=1046097 R8837_RS10605 WP_000081550.1 2117585..2118577(-) (rpoS) [Escherichia coli isolate F374]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1046097 R8837_RS10605 WP_000081550.1 2117585..2118577(-) (rpoS) [Escherichia coli isolate F374]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment