Detailed information NTG1046010

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R8800_RS05135
• Genome accession: NZ_OY754364
• Coordinates: 1067143..1068135 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate F404
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1062143..1073135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8800_RS05105 (FGAF404_09920)	ispD	1062204..1062914 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R8800_RS05110 (FGAF404_09930)	ispF	1062914..1063393 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R8800_RS05115 (FGAF404_09940)	truD	1063390..1064439 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
R8800_RS05120 (FGAF404_09950)	surE	1064420..1065181 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
R8800_RS05125 (FGAF404_09960)	pcm	1065175..1065801 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
R8800_RS05130 (FGAF404_09970)	nlpD	1065986..1067080 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
R8800_RS05135 (FGAF404_09980)	rpoS	1067143..1068135 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
R8800_RS05140 (FGAF404_09990)	ygbN	1068229..1069593 (-)	1365	WP_000104441.1	GntP family transporter	-
R8800_RS05145 (FGAF404_10000)	ygbM	1069682..1070458 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
R8800_RS05150 (FGAF404_10010)	ygbL	1070463..1071101 (-)	639	WP_001278994.1	aldolase	-
R8800_RS05155 (FGAF404_10020)	otnK	1071098..1072360 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1046010 R8800_RS05135 WP_000081550.1 1067143..1068135(+) (rpoS) [Escherichia coli isolate F404]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1046010 R8800_RS05135 WP_000081550.1 1067143..1068135(+) (rpoS) [Escherichia coli isolate F404]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715