Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   R8561_RS07200 Genome accession   NZ_AP028350
Coordinates   1397816..1399000 (-) Length   394 a.a.
NCBI ID   WP_023890555.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392816..1404000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS07175 (B10420_14090) fliL 1393955..1394491 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  R8561_RS07180 (B10420_14100) acpS 1394491..1394838 (+) 348 WP_002783826.1 holo-ACP synthase -
  R8561_RS07185 (B10420_14110) - 1394841..1395263 (-) 423 WP_002808696.1 hypothetical protein -
  R8561_RS07190 (B10420_14120) - 1395260..1396630 (-) 1371 WP_023890557.1 cytochrome P450 -
  R8561_RS07195 (B10420_14130) - 1396627..1397748 (-) 1122 WP_023890556.1 DUF829 domain-containing protein -
  R8561_RS07200 (B10420_14140) kpsS 1397816..1399000 (-) 1185 WP_023890555.1 capsule biosynthesis protein Regulator
  R8561_RS07205 (B10420_14150) - 1398997..1401024 (-) 2028 WP_023890554.1 capsular polysaccharide biosynthesis protein -
  R8561_RS07210 (B10420_14160) - 1401060..1403030 (-) 1971 WP_002795129.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46639.47 Da        Isoelectric Point: 10.0203

>NTDB_id=104600 R8561_RS07200 WP_023890555.1 1397816..1399000(-) (kpsS) [Campylobacter coli strain BCH-10420]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MVFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=104600 R8561_RS07200 WP_023890555.1 1397816..1399000(-) (kpsS) [Campylobacter coli strain BCH-10420]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGTTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGAAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.563

100

0.876

Multiple sequence alignment