Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8800_RS00270 Genome accession   NZ_OY754364
Coordinates   50478..50954 (-) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli isolate F404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45478..55954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8800_RS00230 (FGAF404_00460) setC 45593..46777 (-) 1185 WP_001172876.1 sugar efflux transporter -
  R8800_RS00235 (FGAF404_00470) rhuM 47174..47335 (-) 162 Protein_46 RhuM family protein -
  R8800_RS00240 (FGAF404_00480) - 47569..48414 (-) 846 WP_001406222.1 DUF4942 domain-containing protein -
  R8800_RS00245 (FGAF404_00490) - 48499..48696 (-) 198 WP_000839243.1 DUF957 domain-containing protein -
  R8800_RS00250 (FGAF404_00500) - 48708..49196 (-) 489 WP_112037997.1 DUF5983 family protein -
  R8800_RS00255 (FGAF404_00510) - 49193..49567 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  R8800_RS00260 (FGAF404_00520) - 49657..50025 (-) 369 WP_001280951.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8800_RS00265 (FGAF404_00540) - 50188..50409 (-) 222 WP_001405861.1 DUF987 domain-containing protein -
  R8800_RS00270 (FGAF404_00550) radC 50478..50954 (-) 477 WP_001186724.1 RadC family protein Machinery gene
  R8800_RS00275 (FGAF404_00560) - 50970..51455 (-) 486 WP_001469549.1 antirestriction protein -
  R8800_RS00280 (FGAF404_00570) - 51510..52328 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  R8800_RS00285 (FGAF404_00580) - 52428..52661 (-) 234 WP_001119729.1 DUF905 family protein -
  R8800_RS00290 (FGAF404_00590) - 52740..53195 (-) 456 WP_000581504.1 IrmA family protein -
  R8800_RS00295 (FGAF404_00600) - 53271..55787 (-) 2517 WP_001315618.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=1045989 R8800_RS00270 WP_001186724.1 50478..50954(-) (radC) [Escherichia coli isolate F404]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1045989 R8800_RS00270 WP_001186724.1 50478..50954(-) (radC) [Escherichia coli isolate F404]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment