Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8561_RS06885 Genome accession   NZ_AP028350
Coordinates   1333523..1334491 (+) Length   322 a.a.
NCBI ID   WP_002780538.1    Uniprot ID   A0A400H2N3
Organism   Campylobacter coli strain BCH-10420     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1328523..1339491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS06860 (B10420_13480) - 1329380..1330105 (-) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  R8561_RS06865 (B10420_13490) - 1330114..1330452 (-) 339 WP_002777761.1 hypothetical protein -
  R8561_RS06870 (B10420_13500) - 1330454..1331761 (-) 1308 WP_023890575.1 NFACT family protein -
  R8561_RS06875 (B10420_13510) - 1331823..1332398 (+) 576 WP_002810385.1 molybdenum cofactor guanylyltransferase -
  R8561_RS06880 (B10420_13520) - 1332497..1333390 (+) 894 WP_233347901.1 phospholipase A -
  R8561_RS06885 (B10420_13530) ceuB 1333523..1334491 (+) 969 WP_002780538.1 ABC transporter permease Machinery gene
  R8561_RS06890 (B10420_13540) - 1334484..1335422 (+) 939 WP_002785725.1 iron chelate uptake ABC transporter family permease subunit -
  R8561_RS06895 (B10420_13550) - 1335419..1336174 (+) 756 WP_023890574.1 ABC transporter ATP-binding protein -
  R8561_RS06900 (B10420_13560) - 1336189..1337178 (+) 990 WP_023890573.1 siderophore ABC transporter substrate-binding protein -
  R8561_RS06905 (B10420_13570) - 1337344..1337976 (+) 633 WP_002810397.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35535.38 Da        Isoelectric Point: 9.5069

>NTDB_id=104598 R8561_RS06885 WP_002780538.1 1333523..1334491(+) (ceuB) [Campylobacter coli strain BCH-10420]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104598 R8561_RS06885 WP_002780538.1 1333523..1334491(+) (ceuB) [Campylobacter coli strain BCH-10420]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A400H2N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment