Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8966_RS22320 Genome accession   NZ_OY754357
Coordinates   4530690..4531166 (+) Length   158 a.a.
NCBI ID   WP_001366830.1    Uniprot ID   -
Organism   Escherichia coli isolate F1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4525690..4536166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8966_RS22300 - 4526902..4528124 (-) 1223 Protein_4364 hypothetical protein -
  R8966_RS22305 (FGAF1022_43230) - 4528225..4529109 (+) 885 WP_000010380.1 GTPase family protein -
  R8966_RS22310 (FGAF1022_43240) - 4529295..4530113 (+) 819 WP_001234688.1 DUF932 domain-containing protein -
  R8966_RS22315 (FGAF1022_43250) - 4530195..4530674 (+) 480 WP_000860074.1 antirestriction protein -
  R8966_RS22320 (FGAF1022_43260) radC 4530690..4531166 (+) 477 WP_001366830.1 RadC family protein Machinery gene
  R8966_RS22325 (FGAF1022_43270) - 4531229..4531450 (+) 222 WP_000692326.1 DUF987 domain-containing protein -
  R8966_RS22330 (FGAF1022_43280) - 4531523..4531888 (+) 366 WP_096990786.1 type IV toxin-antitoxin system YeeU family antitoxin -
  R8966_RS22335 (FGAF1022_43290) cbtA 4531934..4532308 (+) 375 WP_242818031.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  R8966_RS22340 (FGAF1022_43300) - 4532308..4532532 (+) 225 Protein_4372 DUF5983 family protein -
  R8966_RS22345 - 4532475..4532657 (+) 183 WP_001354457.1 DUF957 domain-containing protein -
  R8966_RS22350 (FGAF1022_43310) - 4532742..4533584 (+) 843 WP_000120482.1 DUF4942 domain-containing protein -
  R8966_RS22355 - 4533914..4534073 (+) 160 Protein_4375 integrase -
  R8966_RS22360 (FGAF1022_43320) cadC 4534333..4535871 (+) 1539 WP_001187177.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17729.34 Da        Isoelectric Point: 7.2519

>NTDB_id=1045971 R8966_RS22320 WP_001366830.1 4530690..4531166(+) (radC) [Escherichia coli isolate F1022]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1045971 R8966_RS22320 WP_001366830.1 4530690..4531166(+) (radC) [Escherichia coli isolate F1022]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392