Detailed information NTG1045930

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R8966_RS06035
• Genome accession: NZ_OY754357
• Coordinates: 1237143..1238135 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate F1022
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1232143..1243135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8966_RS06005 (FGAF1022_11700)	ispD	1232204..1232914 (+)	711	WP_029490102.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R8966_RS06010 (FGAF1022_11710)	ispF	1232914..1233393 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R8966_RS06015 (FGAF1022_11720)	truD	1233390..1234439 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
R8966_RS06020 (FGAF1022_11730)	surE	1234420..1235181 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
R8966_RS06025 (FGAF1022_11740)	pcm	1235175..1235801 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
R8966_RS06030 (FGAF1022_11750)	nlpD	1235986..1237080 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
R8966_RS06035 (FGAF1022_11760)	rpoS	1237143..1238135 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
R8966_RS06040 (FGAF1022_11770)	ygbN	1238229..1239593 (-)	1365	WP_000104459.1	GntP family transporter	-
R8966_RS06045 (FGAF1022_11780)	ygbM	1239682..1240458 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
R8966_RS06050 (FGAF1022_11790)	ygbL	1240463..1241101 (-)	639	WP_001278994.1	aldolase	-
R8966_RS06055 (FGAF1022_11800)	otnK	1241098..1242360 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1045930 R8966_RS06035 WP_000081550.1 1237143..1238135(+) (rpoS) [Escherichia coli isolate F1022]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1045930 R8966_RS06035 WP_000081550.1 1237143..1238135(+) (rpoS) [Escherichia coli isolate F1022]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715