Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8966_RS04705 Genome accession   NZ_OY754357
Coordinates   958690..959166 (-) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli isolate F1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 953690..964166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8966_RS04665 (FGAF1022_09150) - 953885..954868 (-) 984 WP_001298261.1 SIS domain-containing protein -
  R8966_RS04670 - 955667..955849 (-) 183 Protein_912 IS110 family transposase -
  R8966_RS04675 (FGAF1022_09170) - 956180..957022 (-) 843 WP_182497295.1 DUF4942 domain-containing protein -
  R8966_RS04680 - 957107..957304 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  R8966_RS04685 - 957353..957529 (-) 177 Protein_915 DUF5983 family protein -
  R8966_RS04690 (FGAF1022_09190) - 957526..957903 (-) 378 WP_000854692.1 TA system toxin CbtA family protein -
  R8966_RS04695 (FGAF1022_09200) cbeA 957950..958324 (-) 375 WP_001605875.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  R8966_RS04700 (FGAF1022_09210) - 958400..958621 (-) 222 WP_000692334.1 DUF987 domain-containing protein -
  R8966_RS04705 (FGAF1022_09220) radC 958690..959166 (-) 477 WP_001384029.1 RadC family protein Machinery gene
  R8966_RS04710 (FGAF1022_09230) - 959181..959666 (-) 486 WP_000214317.1 antirestriction protein -
  R8966_RS04715 (FGAF1022_09240) - 959757..960575 (-) 819 WP_317740822.1 DUF932 domain-containing protein -
  R8966_RS04720 (FGAF1022_09250) - 960666..960899 (-) 234 WP_072650320.1 DUF905 family protein -
  R8966_RS04725 (FGAF1022_09260) - 960970..963816 (-) 2847 WP_317740824.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=1045926 R8966_RS04705 WP_001384029.1 958690..959166(-) (radC) [Escherichia coli isolate F1022]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1045926 R8966_RS04705 WP_001384029.1 958690..959166(-) (radC) [Escherichia coli isolate F1022]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAACCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGGCTTATCACTGAGCGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment