Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   R8966_RS00445 Genome accession   NZ_OY754357
Coordinates   94977..95645 (+) Length   222 a.a.
NCBI ID   WP_001321683.1    Uniprot ID   -
Organism   Escherichia coli isolate F1022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89977..100645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8966_RS00415 (FGAF1022_00800) yicC 89996..90859 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  R8966_RS00420 (FGAF1022_00810) rph 90986..91702 (+) 717 WP_001247089.1 ribonuclease PH -
  R8966_RS00425 (FGAF1022_00820) pyrE 91768..92409 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  R8966_RS00430 (FGAF1022_00830) slmA 92446..93042 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  R8966_RS00435 (FGAF1022_00840) dut 93149..93607 (-) 459 WP_000976070.1 dUTP diphosphatase -
  R8966_RS00440 (FGAF1022_00850) coaBC 93585..94805 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  R8966_RS00445 (FGAF1022_00860) radC 94977..95645 (+) 669 WP_001321683.1 RadC family protein Machinery gene
  R8966_RS00450 (FGAF1022_00870) rpmB 95862..96098 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  R8966_RS00455 (FGAF1022_00880) rpmG 96119..96286 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  R8966_RS00460 (FGAF1022_00890) mutM 96384..97193 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  R8966_RS00465 (FGAF1022_00900) coaD 97232..97711 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  R8966_RS00470 (FGAF1022_00910) waaA 97719..98996 (-) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  R8966_RS00475 (FGAF1022_00920) rfaQ 99409..100467 (+) 1059 WP_000360401.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25257.41 Da        Isoelectric Point: 8.9890

>NTDB_id=1045908 R8966_RS00445 WP_001321683.1 94977..95645(+) (radC) [Escherichia coli isolate F1022]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGKYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1045908 R8966_RS00445 WP_001321683.1 94977..95645(+) (radC) [Escherichia coli isolate F1022]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAAAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496