Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R8832_RS16915 Genome accession   NZ_OY754353
Coordinates   3469330..3469935 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate F1005     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3464330..3474935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8832_RS16895 (FGAF1005_32500) aes 3464367..3465326 (+) 960 WP_000801813.1 acetyl esterase -
  R8832_RS16900 (FGAF1005_32510) hemH 3465323..3466285 (-) 963 WP_001250103.1 ferrochelatase -
  R8832_RS16905 (FGAF1005_32520) adk 3466521..3467165 (-) 645 WP_001220233.1 adenylate kinase -
  R8832_RS16910 (FGAF1005_32530) htpG 3467346..3469220 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  R8832_RS16915 (FGAF1005_32540) recR 3469330..3469935 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  R8832_RS16920 (FGAF1005_32550) ybaB 3469935..3470264 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  R8832_RS16925 (FGAF1005_32560) dnaX 3470317..3472248 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  R8832_RS16930 (FGAF1005_32570) apt 3472377..3472928 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  R8832_RS16935 (FGAF1005_32580) ybaN 3473081..3473458 (-) 378 WP_001188905.1 DUF454 family protein -
  R8832_RS16940 (FGAF1005_32590) priC 3473528..3474055 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  R8832_RS16945 (FGAF1005_32600) rsmS 3474069..3474230 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1045879 R8832_RS16915 WP_001195025.1 3469330..3469935(-) (recR) [Escherichia coli isolate F1005]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1045879 R8832_RS16915 WP_001195025.1 3469330..3469935(-) (recR) [Escherichia coli isolate F1005]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443