Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAEM72_RS25540 Genome accession   NZ_CP168764
Coordinates   4882956..4884305 (-) Length   449 a.a.
NCBI ID   WP_087932555.1    Uniprot ID   -
Organism   Bacillus anthracis strain Z03-J001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4877956..4889305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM72_RS25520 (AAEM72_25520) secA 4878278..4880785 (-) 2508 WP_000579383.1 preprotein translocase subunit SecA -
  AAEM72_RS25525 (AAEM72_25525) hpf 4881062..4881604 (-) 543 WP_000671190.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AAEM72_RS25530 (AAEM72_25530) cspC 4881928..4882125 (-) 198 WP_001990088.1 cold shock protein CspC -
  AAEM72_RS25535 (AAEM72_25535) comFC 4882252..4882956 (-) 705 WP_047957195.1 comF operon protein ComFC -
  AAEM72_RS25540 (AAEM72_25540) comFA 4882956..4884305 (-) 1350 WP_087932555.1 ATP-dependent helicase ComFA Machinery gene
  AAEM72_RS25545 (AAEM72_25545) - 4884433..4885746 (-) 1314 WP_000734326.1 NlpC/P60 family protein -
  AAEM72_RS25550 (AAEM72_25550) - 4886001..4886315 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  AAEM72_RS25555 (AAEM72_25555) - 4886489..4887331 (-) 843 WP_000844766.1 DegV family protein -
  AAEM72_RS25560 (AAEM72_25560) - 4887571..4888206 (+) 636 WP_000926682.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51199.87 Da        Isoelectric Point: 9.5047

>NTDB_id=1045620 AAEM72_RS25540 WP_087932555.1 4882956..4884305(-) (comFA) [Bacillus anthracis strain Z03-J001]
MLAGKQLLLEELPSDLRRELSDLKKEGEVICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESIFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELVPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRTGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEIGLLLKGLDHRIDGVHAEDPMRKEKVEAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1045620 AAEM72_RS25540 WP_087932555.1 4882956..4884305(-) (comFA) [Bacillus anthracis strain Z03-J001]
ATGCTCGCTGGAAAGCAGTTACTATTAGAAGAACTCCCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGGAGGG
AGAGGTCATATGTGTACAAGGCGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGCTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAAAAAGAATCTATTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGTACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACGCATCAATTGTTACGTTACTATAGAGCGTTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAACGGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAGGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGAAGCGTTTCGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.914

93.096

0.483
  comFA Latilactobacillus sakei subsp. sakei 23K

40.704

88.641

0.361

Multiple sequence alignment