Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACI6O7_RS02020 Genome accession   NZ_OY725152
Coordinates   409308..410024 (-) Length   238 a.a.
NCBI ID   WP_404379009.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 404308..415024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS02005 (LLWA12L8_FAMOGCFE_00408) cdaA 406000..406878 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  ACI6O7_RS02010 (LLWA12L8_FAMOGCFE_00409) - 406868..407827 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  ACI6O7_RS02015 (LLWA12L8_FAMOGCFE_00410) glmM 407873..409231 (+) 1359 WP_168784686.1 phosphoglucosamine mutase -
  ACI6O7_RS02020 (LLWA12L8_FAMOGCFE_00411) treR 409308..410024 (-) 717 WP_404379009.1 trehalose operon repressor Regulator
  ACI6O7_RS02025 (LLWA12L8_FAMOGCFE_00412) - 410135..410620 (+) 486 WP_012897247.1 glucose PTS transporter subunit IIA -
  ACI6O7_RS02030 (LLWA12L8_FAMOGCFE_00413) - 410757..412322 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  ACI6O7_RS02035 (LLWA12L8_FAMOGCFE_00414) - 412390..414699 (+) 2310 WP_404379012.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.53 Da        Isoelectric Point: 6.4168

>NTDB_id=1045583 ACI6O7_RS02020 WP_404379009.1 409308..410024(-) (treR) [Lactococcus lactis strain IMDO WA12L8]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFRYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1045583 ACI6O7_RS02020 WP_404379009.1 409308..410024(-) (treR) [Lactococcus lactis strain IMDO WA12L8]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAGATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment