Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QU406_RS04260 Genome accession   NZ_OY019088
Coordinates   818925..819401 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 isolate 42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 813925..824401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU406_RS04230 istB 815453..816199 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  QU406_RS04235 - 816282..816632 (+) 351 Protein_837 hypothetical protein -
  QU406_RS04240 - 816648..817058 (+) 411 WP_000846703.1 hypothetical protein -
  QU406_RS04245 - 817279..818097 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  QU406_RS04250 - 818097..818342 (+) 246 WP_001164966.1 hypothetical protein -
  QU406_RS04255 - 818436..818909 (+) 474 WP_001542276.1 antirestriction protein -
  QU406_RS04260 radC 818925..819401 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  QU406_RS04265 yeeT 819464..819685 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  QU406_RS04270 - 819704..820348 (+) 645 WP_000086752.1 hypothetical protein -
  QU406_RS04275 cbeA 820364..820732 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QU406_RS04280 cbtA 820821..821195 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  QU406_RS04285 yeeW 821192..821386 (+) 195 WP_000988600.1 DUF5983 family protein -
  QU406_RS04290 - 821432..821512 (+) 81 Protein_848 hypothetical protein -
  QU406_RS26955 - 821801..821974 (-) 174 WP_032082634.1 transposase domain-containing protein -
  QU406_RS26960 - 822001..822183 (+) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  QU406_RS04305 tmaR 822284..822613 (-) 330 WP_000450409.1 DUF496 family protein -
  QU406_RS04310 yeeA 822785..823843 (-) 1059 WP_001200889.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1045488 QU406_RS04260 WP_001186200.1 818925..819401(+) (radC) [Escherichia coli O25b:H4-ST131 isolate 42]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1045488 QU406_RS04260 WP_001186200.1 818925..819401(+) (radC) [Escherichia coli O25b:H4-ST131 isolate 42]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment